ZFIN ID: ZDB-GENE-040426-1064
Gene Name: calsyntenin 1
Gene Symbol: clstn1    Nomenclature History

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Previous Names: fm67g03, wu:fk52g02, wu:fm67g03, zgc:153744, zgc:56528 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 23 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Involved in several processes, including generation of neurons; homophilic cell adhesion via plasma membrane adhesion molecules; and retrograde transport, endosome to plasma membrane. Predicted to localize to cell surface and postsynaptic membrane. Is expressed in several structures, including axis; musculature system; nervous system; neural tube; and tail bud. Orthologous to human CLSTN1 (calsyntenin 1).
Genome Resources: Alliance (1),  Gene:777737 (1),  Ensembl(GRCz11):ENSDARG00000031720 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la014397Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la028538Tg Transgenic Insertion Unknown Unknown DNA
    sa14307 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16000 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • uw7 Small Deletion Exon 2 Frameshift, Premature Stop TALEN
    uw8 Small Deletion Unknown Frameshift, Premature Stop TALEN
    uw9 Indel Unknown Frameshift TALEN
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-clstn1 N/A 1
    MO2-clstn1 N/A 2
    TALEN1-clstn1 1
    DISEASE ASSOCIATED WITH clstn1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH clstn1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process homophilic cell adhesion via plasma membrane adhesion molecules (more)
    Cellular Component integral component of membrane (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA clstn1-201 (1)    Ensembl 2895
    clstn1-203 (1)    Ensembl 6281
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM clstn1 No data available
    MARKER RELATIONSHIPS
    clstn1 Contained in: [BAC] DKEY-259L18 (1) (order this), DKEY-279E7 (1) (order this)
    clstn1 Encodes: [EST] fk52g02, fm67g03
    [cDNA] MGC:56528 (1), MGC:153744 (1), MGC:165444 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001077784 (1) 3647 nt
    Genomic GenBank:BX571850 (1) 236136 nt Blast at MegaBLAST
    Polypeptide UniProtKB:E7EYL3 (1) 971 aa
    Sequence Information (all 34)
    ORTHOLOGY for clstn1 ( Chr: 23 )
    CITATIONS (33)