ZFIN Sequences for Gene: CH211-173N18

ZFIN ID: ZDB-BAC-070404-606

ZFIN ID: ZDB-BAC-070404-606

SEQUENCE INFORMATION

BAC Name:	CH211-173N18

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001045183 (1)	5877 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:NM_199723 (1)	2077 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:NM_001080039 (1)	1863 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:NM_001386647 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	RefSeq:XM_021476942 (1)	11863 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021476941 (1)	10477 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_005166071 (1)	10476 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_005166072 (1)	10443 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_009302566 (1)	10442 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021471833 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	RefSeq:XM_021471834 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	RefSeq:XM_021477214 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	RefSeq:XM_692408 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	RefSeq:XR_001799515 (1)	4158 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:DQ149509 (1)	5877 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQH01004140 (1)	2411 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC053252 (1)	2077 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC124484 (1)	1863 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQH01006943 (1)	978 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQQ01067026 (1)	954 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQH01004139 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
Genomic	GenBank:CR753817 (2)	236737 nt	Blast at MegaBLAST
	GenBank:AL929458 (1)	137478 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR388364	95553 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX470134 (1)	91865 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX927354 (1)	36414 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A0A8M2BDE6 (1)	1969 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9QAH6 (1)	1969 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M2BDI5 (1)	1958 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M3ATI6 (1)	1958 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:Q20JQ3 (1)	1958 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:Q7T351 (1)	304 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9PKI7 (1)	242 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9PRK7 (1)	242 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9Q726 (1)	242 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:E7F6Y5 (1)	242 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:Q05AJ2 (1)	242 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	RefSeq:NP_001038648 (1)	1958 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:NP_956017 (1)	304 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:NP_001073508 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:NP_001373576 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_005166128 (1)	1969 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_005166129 (1)	1958 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_009300841 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021327508 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021327509 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021332616 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021332617 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021332889 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_697500 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	GenPept:ABA54924 (1)	1958 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAH53252 (1)	304 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAI24485 (1)	242 aa	Select Tool ZFIN BLAST NCBI BLAST

CH211-173N18 CONTAINS

Marker	Type	Accession #	Length (nt/aa)	Analysis
[GENE] atf1 (10)	RNA	RefSeq:NM_199723	2077	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:BC053252	2077	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:GDQH01006943	978	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Genomic	GenBank:AL929458	137478	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:CR388364	95553	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:Q7T351	304	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:NP_956017	304	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	GenPept:AAH53252	304	Select Tool ZFIN BLAST NCBI BLAST
[GENE] scn8ab (18)	RNA	RefSeq:XM_021476942	11863	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_021476941	10477	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_005166071	10476	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_005166072	10443	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_009302566	10442	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:NM_001045183	5877	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XR_001799515	4158	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:DQ149509	5877	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:GDQQ01067026	954	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Genomic	GenBank:CR753817	236737	Blast at MegaBLAST
	Genomic	GenBank:CR388364	95553	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:BX470134	91865	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:BX927354	36414	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:A0A8M9QAH6	1969	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:A0A8M2BDE6	1969	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:Q20JQ3	1958	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:A0A8M3ATI6	1958	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:A0A8M2BDI5	1958	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:XP_021332617		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:XP_021332616		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:XP_009300841		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:XP_005166128	1969	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:XP_005166129	1958	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:NP_001038648	1958	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	GenPept:ABA54924	1958	Select Tool ZFIN BLAST NCBI BLAST
[GENE] tmt1a.1 (8)	RNA	RefSeq:NM_001080039	1863	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:GDQH01004140	2411	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:BC124484	1863	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Genomic	GenBank:AL929458	137478	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:CR388364	95553	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:Q05AJ2	242	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:E7F6Y5	242	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:NP_001073508		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	GenPept:AAI24485	242	Select Tool ZFIN BLAST NCBI BLAST
[GENE] tmt1a.2 (4)	RNA	RefSeq:XM_021477214		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_021471833		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	Genomic	GenBank:AL929458	137478	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:CR388364	95553	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:A0A8M9Q726	242	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:A0A8M9PKI7	242	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:XP_021332889		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:XP_021327508		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
[GENE] tmt1a.3 (4)	RNA	RefSeq:XM_692408		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_021471834		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	RNA	RefSeq:NM_001386647		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	RNA	GenBank:GDQH01004139		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	Genomic	GenBank:AL929458	137478	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:CR388364	95553	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:E7F6Y5	242	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:A0A8M9PRK7	242	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:XP_697500		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:XP_021327509		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:NP_001373576		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast