ZFIN Sequences for Gene: CH211-241E15

ZFIN ID: ZDB-BAC-060503-762

ZFIN ID: ZDB-BAC-060503-762

SEQUENCE INFORMATION

BAC Name:	CH211-241E15

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001114686 (1)	7222 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:NM_178295 (1)	2967 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:NM_001114847 (1)	2087 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:NM_001002749 (1)	2005 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_005168359 (1)	7955 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021475398 (1)	7839 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_005168361 (1)	7749 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_009307327 (1)	7073 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_005168360 (1)	7060 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_005168339 (1)	4376 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_005168372 (1)	2372 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021476276 (1)	2292 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GFIL01036164 (1)	6363 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQH01015497 (1)	4980 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GFIL01037809 (1)	2575 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC162682 (1)	2548 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AB087256 (1)	2442 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQH01005197 (1)	2265 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC076406 (1)	2000 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQH01023168 (1)	1971 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC055546 (1)	1890 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:CK695275 (1)	785 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:CT669240 (1)	739 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AI353547 (1)	400 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX548248 (1)	195620 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX323883 (1)	195250 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX323984 (1)	177080 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX546494 (2)	174501 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX901913	142370 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR936846 (1)	80060 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR933519 (1)	77589 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX629341 (1)	29469 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR926462 (2)	10690 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl
Polypeptide	UniProtKB:B3DH92 (1)	820 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9PVG8 (1)	601 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M1NHK4 (1)	600 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A0R4IYL2 (1)	533 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M2BFN4 (1)	532 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:Q6DGE4 (2)	526 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A2BIC6 (1)	517 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9Q8X5 (1)	506 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	RefSeq:NP_001002749 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:NP_001108158 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:NP_001108319 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:NP_840080 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_005168429 (1)	533 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_005168396 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_005168416 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_005168417 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_005168418 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_009305602 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021331073 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021331951 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	GenPept:AAI62682 (1)	820 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:BAC02687 (1)	813 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:A0A8M1NHK4 (1)		Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAH76406 (1)		Select Tool ZFIN BLAST NCBI BLAST

CH211-241E15 CONTAINS

Marker	Type	Accession #	Length (nt/aa)	Analysis
[GENE] clockb (46)	RNA	RefSeq:XM_005168339	4376	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:NM_178295	2967	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:GDQH01015497	4980	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:BC162682	2548	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AB087256	2442	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:CT669240	739	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Genomic	GenBank:BX548248	195620	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:BX901913	142370	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:CR926462	10690	Select Tool ZFIN BLAST NCBI BLAST Ensembl
	Polypeptide	UniProtKB:B3DH92	820	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:XP_005168396		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:NP_840080		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	GenPept:AAI62682	820	Select Tool ZFIN BLAST NCBI BLAST
	Polypeptide	GenPept:BAC02687	813	Select Tool ZFIN BLAST NCBI BLAST
[GENE] lap3 (15)	RNA	RefSeq:NM_001114847	2087	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:GDQH01005197	2265	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:BC055546	1890	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Genomic	GenBank:BX901913	142370	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:A2BIC6	517	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:NP_001108319		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
[GENE] rbm47 (9)	RNA	RefSeq:XM_005168359	7955	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_021475398	7839	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_005168361	7749	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:NM_001114686	7222	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_009307327	7073	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_005168360	7060	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:GFIL01036164	6363	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Genomic	GenBank:BX901913	142370	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:A0A8M9PVG8	601	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:A0A8M1NHK4	600	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:A0A8M2BFN4	532	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:XP_021331073		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:XP_009305602		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:XP_005168418		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:XP_005168417		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:XP_005168416		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:NP_001108158		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	GenPept:A0A8M1NHK4		Select Tool ZFIN BLAST NCBI BLAST
[GENE] si:dkeyp-118a3.2 (3)	RNA	RefSeq:XM_005168372	2372	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_021476276	2292	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:GFIL01037809	2575	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:CK695275	785	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Genomic	GenBank:BX546494	174501	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:BX901913	142370	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:A0A0R4IYL2	533	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:A0A8M9Q8X5	506	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:XP_021331951		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:XP_005168429	533	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
[GENE] tyrp1b (59)	RNA	RefSeq:NM_001002749	2005	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:BC076406	2000	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:GDQH01023168	1971	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AI353547	400	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Genomic	GenBank:BX323883	195250	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:BX323984	177080	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:BX546494	174501	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:BX901913	142370	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:CR936846	80060	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:CR933519	77589	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:BX629341	29469	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:Q6DGE4	526	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:NP_001002749		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	GenPept:AAH76406		Select Tool ZFIN BLAST NCBI BLAST