ZFIN ID: ZDB-GENE-001212-1

ZFIN ID: ZDB-GENE-001212-1

Mapping Details

Gene Name:	ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 1
Symbol:	atp1a1a.1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN JBrowse	1	1,712,140 - 1,731,564	GRCz11
ZFIN JBrowse	1	1,712,140 - 1,731,564	GRCz11
Ensembl	1	1,712,140 - 1,731,564	GRCz11
Ensembl	1	1,712,140 - 1,731,564	GRCz11
Vega	1	1,564,346 - 1,645,577	GRCv10
NCBI Map Viewer	1	1,712,169 - 1,731,564	GRCz11
UCSC	1	-	GRCz11
UCSC	1	-	GRCz11

Mapped Clones containing atp1a1a.1
DKEY-208K14	Chr: 1 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
la1	1	1,723,701 - 1,723,759	GRCz11	Shu et al., 2003
m883	1	1,721,783	GRCz11	ZFIN Curated Data
mw15b	1	1,723,701 - 1,723,763	GRCz11	Yuan et al., 2004
sa12184	1	1,723,509	GRCz11	Busch-Nentwich et al., 2013
	1	1,575,715	GRCz10	Busch-Nentwich et al., 2013
	1	1,480,295	Zv9	Busch-Nentwich et al., 2013
sa13646	1	1,717,841	GRCz11	Busch-Nentwich et al., 2013
	1	1,570,047	GRCz10	Busch-Nentwich et al., 2013
	1	1,474,627	Zv9	Busch-Nentwich et al., 2013
sa15598	1	1,721,783	GRCz11	Busch-Nentwich et al., 2013
	1	1,573,989	GRCz10	Busch-Nentwich et al., 2013
	1	1,478,569	Zv9	Busch-Nentwich et al., 2013
sa19398	1	1,718,882	GRCz11	Busch-Nentwich et al., 2013
	1	1,571,088	GRCz10	Busch-Nentwich et al., 2013
	1	1,475,668	Zv9	Busch-Nentwich et al., 2013
sa31185	1	1,712,358	GRCz11	Busch-Nentwich et al., 2013
	1	1,564,564	GRCz10	Busch-Nentwich et al., 2013
	1	1,469,144	Zv9	Busch-Nentwich et al., 2013
sa38236	1	1,724,421	GRCz11	Busch-Nentwich et al., 2013
	1	1,576,627	GRCz10	Busch-Nentwich et al., 2013
	1	1,481,207	Zv9	Busch-Nentwich et al., 2013
tx218	1	1,723,677	GRCz11	Pott et al., 2018
la028094Tg	1	1,469,800 - 1,469,810	Zv9
m883	1		GRCz11
hi3475Tg	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
la1	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
la028094Tg	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
m115	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
m273	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
m291	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
m523	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
m883	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
mw15b	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
s646	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
sa12184	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
sa13646	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
sa15598	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
sa19398	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
sa31185	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
sa38236	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
tj223	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
tl30	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
tm52	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
to273a	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
tu236	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
tw3b	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
tx218	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
zko58a	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11
zko58b	1		GRCz11
	1		GRCz11
	1		GRCz11
	1		GRCz11

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
1	0.0 cM	atp1a1a_1	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z9382	SSLP	1		Rajarao et al., 2001	Rajarao, et al. (2001. Genome Res 11:1211-1220.) report mapping atp1a1a.1 to ...
z9394	SSLP	1		Rajarao et al., 2001	Rajarao, et al. (2001. Genome Res 11:1211-1220.) report mapping atp1a1a.1 to ...

Genomic Feature m883 is an allele of atp1a1a.1

Chr 1

Ellertsdottir et al., 2006

Fine mapping with a single embryo panel representing 246 meioses revealed no recombination events ...

Genomic Feature m883 is an allele of atp1a1a.1