ZFIN ID: ZDB-GENE-990708-7
Gene Name: orthopedia homeobox b
Gene Symbol: otpb
Sequence Ontology ID : SO:0000704

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Previous Names: otp1 (1), otp, otpa, cb977 (1), otp a

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 50 figures from 20 publications
Directly Submitted Expression Data: 6 figures (22 images) from Thisse et al., 2001 [cb977]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
az10 Small Deletion Unknown Unknown CRISPR
az9 Small Deletion Unknown Unknown CRISPR
sa115 Small Deletion Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa8966 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa12381 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45228 Point Mutation Unknown Premature Stop ENU
    Targeting reagents:
    PHENOTYPE
    Data: 5 figures from 4 publications
    Observed in:
    DISEASE ASSOCIATED WITH otpb HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH otpb VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process forebrain neuron development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000047 (1)
  • InterPro:IPR001356 (1)
  • InterPro:IPR003654 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • PROSITE:PS50803 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF03826 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA otpb-001 (1) 1845
    otpb-002 (1) 1825
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM otpb
    MARKER RELATIONSHIPS
    otpbContained in: [BAC] CH211-194B21 (1) (order this)
    otpbEncodes: [EST] cb977 (1) (order this)
    [cDNA] MGC:92914 (1) (order this), MGC:191282 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131100 (1) 1880bp
    Genomic GenBank:BX470070 (1) 228177bp Blast at MegaBLAST
    Polypeptide UniProtKB:B0S6A5 (1) 315aa
    Sequence Clusters UniGene:81295 (1)
    Sequence Information (all 21)
    OTHER otpb GENE PAGES
  • Alliance (1)
  • Gene:30316 (1)
  • VEGA:OTTDARG00000019338 (1)
  • Ensembl(GRCz11):ENSDARG00000058379 (2)
  • ORTHOLOGY for otpb (Chr: 5)
    CITATIONS (64)