ZFIN ID: ZDB-GENE-990415-271
Gene Name: rhodopsin
Gene Symbol: rho
Sequence Ontology ID : SO:0000704

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Previous Names: Rh, opsin-like gene, rh1.1 (1), rod opsin, wu:fi06d11 (1), zfo2, zfrho

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Exhibits G protein-coupled photoreceptor activity and retinal binding activity; involved in absorption of visible light; localizes to the photoreceptor outer segment; orthologous to human RHO  ...
GENE EXPRESSION
All Expression Data: 110 figures from 82 publications
Directly Submitted Expression Data: 4 figures (6 images) from Thisse et al., 2004 [MGC:55266]
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
djh503 Small Deletion Unknown Unknown CRISPR
fl10 Small Deletion Unknown Inframe Deletion CRISPR
fl6 Insertion Exon 1 Premature Stop CRISPR
fl7 Indel Unknown Inframe Deletion CRISPR
fl8 Indel Unknown Inframe Deletion CRISPR
fl9 Small Deletion Unknown Premature Stop CRISPR
ouc2003 Small Deletion Unknown Premature Stop CRISPR
sa21401 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31692 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 5 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH rho HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    congenital stationary night blindness autosomal dominant 1 Night blindness, congenital stationary, autosomal dominant 1 610445
    fundus albipunctatus Retinitis punctata albescens 136880
    retinitis pigmentosa 4 Retinitis pigmentosa 4, autosomal dominant or recessive 613731
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process absorption of visible light (more)
    Cellular Component photoreceptor outer segment (more)
    Molecular Function G protein-coupled photoreceptor activity (more)
    GO Terms (all 19)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000276 (1)
  • InterPro:IPR000732 (1)
  • InterPro:IPR001760 (1)
  • InterPro:IPR017452 (1)
  • InterPro:IPR019477 (1)
  • InterPro:IPR027430 (1)
  • PROSITE:PS00237 (1)
  • PROSITE:PS00238 (1)
  • PROSITE:PS50262 (1)
  • Pfam:PF00001 (1)
  • Pfam:PF10413 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rho-201 (1) 1555
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rho
    MARKER RELATIONSHIPS
    rhoContained in: [Fosmid] CH1073-268B21 (1) (order this), CH1073-274H22 (1) (order this)
    rhoContains: [SNP] rs3729490 (1)
    rhoEncodes: [EST] fi06d11 (1)
    [cDNA] MGC:55266 (1) (order this), MGC:77587 (1) (order this), MGC:191346 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131084 (1) 1584bp
    Genomic GenBank:CU638733 (1) 38253bp
    Select Tool
    Polypeptide UniProtKB:B8JMK8 (1) 354aa
    Sequence Clusters UniGene:354 (1)
    Sequence Information (all 44)
    OTHER rho GENE PAGES
  • Alliance (1)
  • Gene:30295 (1)
  • VEGA:OTTDARG00000028940 (1)
  • Ensembl(GRCz11):ENSDARG00000002193 (2)
  • ORTHOLOGY for rho (Chr: 8)
    CITATIONS (196)