ZFIN ID: ZDB-GENE-990415-171
Gene Name: cadherin 2, type 1, N-cadherin (neuronal)
Gene Symbol: cdh2
Sequence Ontology ID : SO:0000704

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Attributions

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Previous Names: bib, glass onion (1), glo (1), labyrinth (1), lyr (1), n-cadherin (1), ncad, neural cadherin, pac (1), parachute (1), wu:fb47h04, zncad

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 53 figures from 33 publications
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
cdh2_unspecified Unspecified Unknown Unknown
fr7 Point Mutation Unknown Premature Stop ENU
hi1389Tg Transgenic Insertion Unknown Unknown DNA
hi3096Tg Transgenic Insertion Unknown Unknown DNA
hi3644Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la013796Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la021425Tg Transgenic Insertion Unknown Unknown DNA
    la021426Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la021427Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • m117 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • p79emcf Point Mutation Unknown Unknown ENU
    r210 Point Mutation Unknown Unknown ENU
    rw95 Point Mutation Unknown Unknown ENU
    rw707 Unknown Unknown Unknown
    sa206 Point Mutation Unknown Premature Stop ENU
    sa11989 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15918 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa16882 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32283 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tb8 Point Mutation Unknown Missense ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tc248c Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tg1a Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tg299b Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tj250a Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tm101 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • vu91 Point Mutation Unknown Unknown ENU
    vu125 Point Mutation Unknown Unknown ENU
    wi440Tg Transgenic Insertion Unknown Unknown DNA
    Targeting reagents:
    PHENOTYPE
    Data: 86 figures from 28 publications
    Observed in:
    DISEASE ASSOCIATED WITH cdh2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cdh2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process dorsal convergence (more)
    Cellular Component catenin complex (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 66)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000233 (1)
  • InterPro:IPR002126 (1)
  • InterPro:IPR014868 (1)
  • InterPro:IPR015919 (1)
  • InterPro:IPR020894 (1)
  • InterPro:IPR027397 (1)
  • InterPro:IPR030051 (1)
  • InterPro:IPR039808 (1)
  • PROSITE:PS00232 (1)
  • PROSITE:PS50268 (1)
  • Pfam:PF00028 (1)
  • Pfam:PF01049 (1)
  • Pfam:PF08758 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cdh2-001 (1) 4853
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM cdh2
    MARKER RELATIONSHIPS
    cdh2Contained in: [BAC] CH73-317E11 (1) (order this), DKEYP-38F5 (1)
    cdh2Encodes: [EST] fb47h04, ft03g07
    [cDNA] MGC:158217 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131081 (1) 2446bp
    Genomic RefSeq:NW_018395066 (1) Blast at MegaBLAST
    Polypeptide UniProtKB:A0A2R8QKB4 (1) 909aa
    Sequence Clusters UniGene:75081 (1)
    Sequence Information (all 35)
    OTHER cdh2 GENE PAGES
  • Alliance (1)
  • Gene:30291 (1)
  • VEGA:OTTDARG00000015513 (1)
  • ORTHOLOGY for cdh2 (Chr: 20)
    CITATIONS (171)