Gene

mef2ca

ID

ZDB-GENE-980526-253

Name

myocyte enhancer factor 2ca

Symbol

mef2ca Nomenclature History

Previous Names

mef2c
hoo
hoover
id:ibd5026
wu:fc05b06
zgc:64184
zgc:85726

Type

protein_coding_gene

Location

Chr: 10 Mapping Details/Browsers

Description

Enables transcription cis-regulatory region binding activity. Involved in cell differentiation and regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including animal organ development; ligamentous ossification; and skeletal muscle myosin thick filament assembly. Predicted to be located in nucleus. Is expressed in several structures, including brain; mesoderm; musculature system; pericardial region; and pharyngeal arch. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 20. Orthologous to human MEF2C (myocyte enhancer factor 2C).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

44 figures from 28 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:85726 (15 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 24 figures from 9 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With mef2ca Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
autosomal dominant mental retardation 20	Alliance	Chromosome 5q14.3 deletion syndrome	613443
autosomal dominant mental retardation 20	Alliance	Neurodevelopmental disorder with hypotonia, stereotypic hand movements, and impaired language	613443

Associated With mef2ca Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR002100	Transcription factor, MADS-box
Domain	IPR022102	Holliday junction regulator protein family C-terminal
Domain	IPR033896	MADS MEF2-like
Homologous_superfamily	IPR036879	Transcription factor, MADS-box superfamily

Domain Details Per Protein

Protein	Length	Holliday junction regulator protein family C-terminal	MADS MEF2-like	Transcription factor, MADS-box	Transcription factor, MADS-box superfamily
UniProtKB:F1Q9U5 InterPro	380
UniProtKB:F1QRV7 InterPro	363
UniProtKB:F1RAB7 InterPro	379
UniProtKB:A0A0U3L9U2 InterPro	25
UniProtKB:A0A0U3JVR0 InterPro	371
UniProtKB:A0A068EUV3 InterPro	411
UniProtKB:E9QCL1 InterPro	86
UniProtKB:Q98869 InterPro	449
UniProtKB:A0A068F1F8 InterPro	414
UniProtKB:Q6PCS3 InterPro	465
UniProtKB:Q6NSN7 InterPro	491
UniProtKB:A0A0U3L6K5 InterPro	81

Transcripts

Genome Browsers

Type	Name	Length (nt)	Analysis
mRNA	mef2ca-201 Ensembl	3502 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	mef2ca-203 Ensembl	3567 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	mef2ca-204 Ensembl	6164 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	mef2ca-205 Ensembl	393 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	mef2ca-206 Ensembl	318 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	mef2ca-207 Ensembl	393 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab2-mef2	polyclonal	mef2aa mef2ca mef2cb mef2d	IgG	Rabbit	IHC	AnaSpec	4
Ab2-mef2c	polyclonal	mef2ca mef2cb		Rabbit	WB	AnaSpec	2

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations