ZFIN ID: ZDB-GENE-980526-214
Gene Name: homeobox D4a
Gene Symbol: hoxd4a
Sequence Ontology ID : SO:0000704

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Previous Names: hoxd4, etID309823.9 (1), etID37000.9 (1), fb36c05, wu:fb36c05 (1)

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding activity transcription activator activity, RNA polymerase II-specific, RNA polymerase II regulatory region sequence-specific DNA binding activity, and activating  ...
GENE EXPRESSION
All Expression Data: 44 figures from 25 publications
Directly Submitted Expression Data: 6 figures (23 images) from Thisse et al., 2005 [eu419]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la016502Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa30912 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31696 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 3 figures from Amali et al., 2013
    Observed in:
    DISEASE ASSOCIATED WITH hoxd4a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxd4a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process angiogenesis (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR001827 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR017995 (1)
  • InterPro:IPR020479 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS00032 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA hoxd4a-001 (1) 2288
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM hoxd4a
    MARKER RELATIONSHIPS
    hoxd4aContained in: [BAC] RP71-78H1 (1) (order this)
    hoxd4aContains: [SNP] rs3728207 (1), rs3728208 (1)
    hoxd4aEncodes: [EST] eu419 (1), fb36c05 (1)
    [cDNA] MGC:194402 (1), MGC:194421 (1), MGC:194711 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001126445 (1) 1247bp
    Genomic GenBank:BX322661 (1) 146527bp
    Select Tool
    Polypeptide UniProtKB:B0S5Y5 (1) 256aa
    Sequence Clusters UniGene:75800 (1)
    Sequence Information (all 28)
    OTHER hoxd4a GENE PAGES
  • Alliance (1)
  • Gene:30329 (1)
  • VEGA:OTTDARG00000017438 (1)
  • Ensembl(GRCz11):ENSDARG00000059276 (2)
  • ORTHOLOGY for hoxd4a (Chr: 9)
    CITATIONS (78)