ZFIN ID: ZDB-GENE-090313-191
Gene Name: PDZ domain containing 7a
Gene Symbol: pdzd7a
Sequence Ontology ID : SO:0000704

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Previous Names: pdzd7, si:dkey-158p2.1

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 2 figures from Ebermann et al., 2010
Wild-type Stages, Structures: Larval:Protruding-mouth (72.0h-96.0h, 3.5mm) to Adult (90d-730d, breeding adult)
  eye photoreceptor cell photoreceptor connecting cilium, eye photoreceptor cell photoreceptor outer segment, hair cell anterior macula, hair cell anterior macula apical part of cell (all 9) expand
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa42176 Point Mutation Unknown Premature Stop ENU
Targeting reagents: MO1-pdzd7a (1)
PHENOTYPE
Data: Fig. 5 from Ebermann et al., 2010
Observed in: anterior crista stereocilium bundle, eye photoreceptor cell photoreceptor connecting cilium, eye photoreceptor cell, eye photoreceptor cell development (all 5) expand
DISEASE ASSOCIATED WITH pdzd7a HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
Usher syndrome type 2A {Retinal disease in Usher syndrome type IIA, modifier of} 276901
Usher syndrome type 2C Usher syndrome, type IIC, GPR98/PDZD7 digenic 605472
GENE ONTOLOGY
Ontology GO Term
Biological Process eye photoreceptor cell development (more)
GO Terms (all 2)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001478 (1)
  • InterPro:IPR036034 (1)
  • PROSITE:PS50106 (1)
  • Pfam:PF00595 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pdzd7a-001 (1) 805
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Ab1-pdzd7a (1)
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pdzd7a No data available
    MARKER RELATIONSHIPS
    pdzd7aContained in: [BAC] DKEY-158P2 (1) (order this), DKEY-250A11 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001190757 (1)
    Genomic GenBank:BX936291 (1) 195395bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IEP0 (1) 955aa
    Sequence Clusters UniGene:159204 (1)
    Sequence Information (all 17)
    OTHER pdzd7a GENE PAGES
  • Alliance (1)
  • Gene:100332580 (1)
  • VEGA:OTTDARG00000029568 (1)
  • Ensembl(GRCz10):ENSDARG00000076974 (1)
  • ORTHOLOGY for pdzd7a (Chr: 13)
    CITATIONS (12)