ZFIN ID: ZDB-GENE-090311-17
Gene Name: sidekick cell adhesion molecule 1b
Gene Symbol: sdk1b
Sequence Ontology ID : SO:0000704

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Previous Names: si:rp71-86k19.1 (1), zgc:171522 (1)

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(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules, retina layer formation, and synapse assembly; predicted to localize to the synapse; orthologous to human  ...
GENE EXPRESSION
All Expression Data: 4 figures from Galicia et al., 2018
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Larval:Day 4 (96.0h-120.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa5935 Point Mutation Unknown Premature Stop ENU
sa9553 Point Mutation Unknown Missense, Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa9945 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11498 Point Mutation Unknown Missense, Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11705 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17607 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa19443 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa24835 Point Mutation Unknown Premature Stop ENU
    sa38249 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39560 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39561 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zko237a Insertion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • zko237b Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sdk1b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sdk1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003598 (1)
  • InterPro:IPR003599 (1)
  • InterPro:IPR003961 (1)
  • InterPro:IPR007110 (1)
  • InterPro:IPR013098 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR036116 (1)
  • InterPro:IPR036179 (1)
  • PROSITE:PS50835 (1)
  • PROSITE:PS50853 (1)
  • Pfam:PF00041 (1)
  • Pfam:PF07679 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sdk1b-202 (1) 6642
    sdk1b-203 (1) 935
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sdk1b No data available
    MARKER RELATIONSHIPS
    sdk1bContained in: [BAC] CH73-78P21 (1) (order this), CH73-346O18 (1) (order this), DKEY-9K8 (1) (order this), RP71-86K19 (1) (order this)
    sdk1bEncodes: [cDNA] MGC:171522 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_017355965 (1)
    Genomic RefSeq:NW_018394463 (1) Blast at MegaBLAST
    Polypeptide UniProtKB:F1R721 (1) 2095aa
    Sequence Clusters UniGene:151739 (1)
    Sequence Information (all 36)
    OTHER sdk1b GENE PAGES
  • Alliance (1)
  • Gene:555553 (1)
  • VEGA:OTTDARG00000029833 (1)
  • Ensembl(GRCz11):ENSDARG00000062854 (2)
  • ORTHOLOGY for sdk1b (Chr: 1)
    CITATIONS (18)