Gene

sdcbp

ID

ZDB-GENE-081104-57

Name

syndecan binding protein (syntenin)

Symbol

sdcbp Nomenclature History

Previous Names

sb:eu862
si:dkey-235k4.1
syntenin-b (1)

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Enables syndecan binding activity. Predicted to act upstream of or within proteolysis. Predicted to be located in nucleus. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SDCBP (syndecan binding protein).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 3 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

eu862 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sdcbp Human Ortholog

No data available

Associated With sdcbp Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001478	PDZ domain
Family	IPR051230	Amyloid-beta A4 Precursor Protein-Binding
Homologous_superfamily	IPR036034	PDZ superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	Amyloid-beta A4 Precursor Protein-Binding	PDZ domain	PDZ superfamily
UniProtKB:F1QFG9	InterPro	307

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	sdcbp-201 (1) Ensembl	Ensembl		1,269 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-sdcbp		sdcbp sdcbp2		Rabbit	IHC		1

Plasmids

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations