ZFIN ID: ZDB-GENE-081104-57
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Gene Name: syndecan binding protein (syntenin)
Gene Symbol: sdcbp    Nomenclature History

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Previous Names: sb:eu862, si:dkey-235k4.1, syntenin-b (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 7 Mapping Details/Browsers
Description: Exhibits syndecan binding activity. Predicted to localize to the cytoplasm and plasma membrane. Orthologous to human SDCBP (syndecan binding protein).
Genome Resources: Alliance (1),  Gene:407719 (1),  Ensembl(GRCz11):ENSDARG00000030097 (2)
GENE EXPRESSION
All Expression Data: 3 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2005 [eu862]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa44676 Point Mutation Unknown Unknown ENU
PHENOTYPE No data available
DISEASE ASSOCIATED WITH sdcbp HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH sdcbp VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Cellular Component cytoplasm (more)
Molecular Function syndecan binding (more)
GO Terms (all 3)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR001478 PDZ domain
Homologous_superfamily IPR036034 PDZ superfamily
Domain IPR041489 PDZ domain 6
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA sdcbp-201 (1)    Ensembl 1269
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Browsers: UCSC,  NCBI,  Ensembl,  ZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES
Name Type Isotype Host Organism Assay Source Publications
Ab1-sdcbp Rabbit IHC 1
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM sdcbp No data available
MARKER RELATIONSHIPS
sdcbp Contained in: [BAC] DKEY-235K4 (1) (order this)
sdcbp Encodes: [EST] eu862 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_214798 (1) 1268 bp
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Genomic GenBank:CR354540 (1) 165122 bp
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Polypeptide UniProtKB:F1QFG9 (1) 307 aa
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Sequence Information (all 10)
ORTHOLOGY for sdcbp ( Chr: 7 )
CITATIONS (17)