ZFIN ID: ZDB-GENE-080130-3
Gene Name: solute carrier family 12 (sodium/potassium/chloride transporter), member 1
Gene Symbol: slc12a1
Sequence Ontology ID : SO:0000704

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Previous Names: nkcc2 (1), si:ch73-34a12.1

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(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 30 figures from 16 publications
Wild-type Stages, Structures: Segmentation:26+ somites (22.0h-24.0h) to Adult (90d-730d, breeding adult)
  developing mesonephric nephron, distal early tubule, eye, mesonephric duct apical plasma membrane (all 6) expand
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH slc12a1 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
Bartter disease type 1 Bartter syndrome, type 1 601678
GENE ONTOLOGY
Ontology GO Term
Biological Process ion transport (more)
Cellular Component apical plasma membrane (more)
Molecular Function cation:chloride symporter activity (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002443 (1)
  • InterPro:IPR002445 (1)
  • InterPro:IPR004841 (1)
  • InterPro:IPR004842 (1)
  • InterPro:IPR018491 (1)
  • Pfam:PF00324 (1)
  • Pfam:PF03522 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ottdart00000062234 (1) 1983
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Ab1-slc12a (1)
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM slc12a1 No data available
    MARKER RELATIONSHIPS
    slc12a1Contained in: [BAC] CH73-34A12 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_021467734 (1)
    Genomic GenBank:CU498833 (1) 66872bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IMU6 (1) 681aa
    Sequence Clusters UniGene:156611 (1)
    Sequence Information (all 12)
    OTHER slc12a1 GENE PAGES
  • Alliance (1)
  • Gene:100329975 (1)
  • VEGA:OTTDARG00000043018 (1)
  • Ensembl(GRCz10):ENSDARG00000098096 (1)
  • ORTHOLOGY for slc12a1 (Chr: 18)
    CITATIONS (30)