Gene

slbp2

ID

ZDB-GENE-070112-1722

Name

stem-loop binding protein 2

Symbol

slbp2 Nomenclature History

Previous Names

srh
zgc:158856 (1)

Type

protein_coding_gene

Location

Chr: 21 Mapping Details/Browsers

Description

Enables histone pre-mRNA stem-loop binding activity. Acts upstream of or within embryonic cleavage and oogenesis. Predicted to be located in nucleus. Predicted to be part of histone pre-mRNA 3'end processing complex. Predicted to be active in cytoplasm. Is expressed in ovary and unfertilized egg.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

5 figures from 4 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 5 figures from 3 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With slbp2 Human Ortholog

No data available

Associated With slbp2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR029344	Histone RNA hairpin-binding protein, RNA-binding domain
Family	IPR026502	Histone RNA stem-loop-binding protein SLBP1/SLBP2
Homologous_superfamily	IPR038294	SLBP, RNA-binding domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	Histone RNA hairpin-binding protein, RNA-binding domain	Histone RNA stem-loop-binding protein SLBP1/SLBP2	SLBP, RNA-binding domain superfamily
UniProtKB:A1L2F4	InterPro	326

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	slbp2-201 (1) Ensembl	Ensembl	1,427 nt	Select Tool ZFIN BLAST
ncRNA	slbp2-002 (1) Ensembl	Ensembl	776 nt	Select Tool ZFIN BLAST
ncRNA	slbp2-003 (1) Ensembl	Ensembl	625 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-slbp2	polyclonal	slbp2		Rabbit	IHC WB		1

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations