ZFIN ID: ZDB-GENE-061218-2
Gene Name: ataxin 1b
Gene Symbol: atxn1b
Previous Names: atxn1 (1), atxn1a (1)
Location: Chr: 16   Details
Nomenclature History
GENE EXPRESSION
All Expression Data: 2 figures from Carlson et al., 2009
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
  cerebellum
MUTANTS AND TARGETED KNOCKDOWNS

Allele Type Mutagen Suppliers
la019660Tg Transgenic Insertion DNA
PHENOTYPE No data available
DISEASE ASSOCIATED WITH atxn1b HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
spinocerebellar ataxia Spinocerebellar ataxia 1 164400
GENE ONTOLOGY
Ontology GO Term
Cellular Component nucleus (more)
Molecular Function RNA binding (more)
GO Terms (all 2)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR013723 (1)
  • InterPro:IPR020997 (1)
  • PROSITE:PS51148 (1)
  • Pfam:PF08517 (1)
  • Pfam:PF12547 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA atxn1b-001 (1) 8697
    GENE PRODUCT DESCRIPTION
    ANTIBODIES
    Ab1-atxn1 (1), Ab2-atxn1 (1)
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM atxn1b No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    atxn1b Contained in: [BAC] CH211-222P22 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_689102 (1) 3999 bp
    Genomic GenBank:CR388381 (1) 141855 bp
    Select Tool
    Polypeptide UniProtKB:E7F6Z5 (1) 827 aa
    Sequence Clusters UniGene:118564 (1)
    Sequence Information (all 8)
    OTHER atxn1b GENE PAGES
  • Gene:565841 (1)
  • VEGA:OTTDARG00000034372 (1)
  • Ensembl(Zv9):ENSDARG00000060862 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish atxn1b 16  
    Human ATXN1 6 (6p23)
  • OMIM:601556
  • Gene:6310
  • Mouse Atxn1 13 ( 21.98 cM)
  • MGI:104783
  • Gene:20238
  • Orthology Details
    CITATIONS (17)