Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-061218-2
Gene Name: ataxin 1b
Gene Symbol: atxn1b
Previous Names: atxn1 (1), atxn1a (1)
Location: Chr: 16   Details
Nomenclature History
GENE EXPRESSION
All Expression Data: 2 figures from Carlson et al., 2009
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
  cerebellum
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: la019660Tg
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
Spinocerebellar ataxia 1 164400
GENE ONTOLOGY
Ontology GO Term
Cellular Component nucleus (more)
Molecular Function RNA binding (more)
GO Terms (all 2)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR013723 (1)
  • InterPro:IPR020997 (1)
  • PROSITE:PS51148 (1)
  • Pfam:PF08517 (1)
  • Pfam:PF12547 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA atxn1b-001 (1) 8697
    GENE PRODUCT DESCRIPTION
    ANTIBODIES
    Ab1-atxn1 (1), Ab2-atxn1 (1)
    CONSTRUCTS WITH SEQUENCES FROM atxn1b No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    atxn1b Contained in: [BAC] CH211-222P22 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_005158159 (1) 4938 bp
    Genomic GenBank:CR388381 (1) 141855 bp
    Select Tool
    Polypeptide UniProtKB:E7F6Z5 (1) 827 aa
    Sequence Clusters UniGene:118564 (1)
    Sequence Information (all 8)
    OTHER atxn1b GENE PAGES
  • Gene:565841 (1)
  • VEGA:OTTDARG00000034372 (1)
  • Ensembl(Zv9):ENSDARG00000060862 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish atxn1b 16  
    Human ATXN1 6 (6p23)
  • OMIM:601556
  • Gene:6310
  • Mouse Atxn1 13 ( 21.98 cM)
  • MGI:104783
  • Gene:20238
  • Orthology Details
    CITATIONS (16)