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ZIRC
ZFIN ID: ZDB-GENE-060929-1098
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Gene Name: zgc:153292
Gene Symbol: zgc:153292    Nomenclature History

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Previous Name: im:6893131

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have DNA binding activity and metal ion binding activity. Orthologous to human THAP2 (THAP domain containing 2).
Genome Resources: Alliance (1),  Gene:100003014 (1),  Ensembl(GRCz11):ENSDARG00000070458 (1)

Nomenclature Note: This gene is characterized by full length cDNAs isolated as part of the Zebrafish Gene Collection (ZGC). When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix `zgc:' indicates that this gene is represented by cDNAs generated by the ZGC project.

GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6893131]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa7545 Point Mutation Unknown Missense ENU
sa15015 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa16741 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa33202 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH zgc:153292 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH zgc:153292 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component cellular_component (more)
    Molecular Function DNA binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006612 (1)
  • InterPro:IPR012337 (1)
  • InterPro:IPR026516 (1)
  • InterPro:IPR036397 (1)
  • InterPro:IPR038441 (1)
  • PROSITE:PS50950 (1)
  • Pfam:PF05485 (1)
    • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA zgc:153292-201 (1)    Ensembl 1534
    Select Tool
    ncRNA zgc:153292-002 (1)    Ensembl 692
    Select Tool
    Browsers: UCSC,  NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM zgc:153292 No data available
    MARKER RELATIONSHIPS
    zgc:153292 Contained in: [BAC] DKEY-66I24 (1) (order this)
    zgc:153292 Encodes: [EST] IMAGE:6893131 (1) (order this)
    [cDNA] MGC:153292 (1) (order this), MGC:174598 (1) (order this), MGC:198080 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001076669 (1) 1507 bp
    Select Tool
    Genomic GenBank:BX004999 (1) 168839 bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8QQZ2 (1) 432 aa
    Select Tool
    Sequence Clusters UniGene:65838 (1)
    Sequence Information (all 26)
    ORTHOLOGY for zgc:153292 ( Chr: 3 )
    CITATIONS (16)