ZFIN ID: ZDB-GENE-060929-1042
Gene Name: Rab geranylgeranyltransferase subunit alpha
Gene Symbol: rabggta    Nomenclature History

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Previous Name: zgc:153107

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 23 Mapping Details/Browsers
Description: Predicted to contribute to Rab geranylgeranyltransferase activity. Predicted to be involved in protein geranylgeranylation. Predicted to localize to Rab-protein geranylgeranyltransferase complex. Orthologous to human RABGGTA (Rab geranylgeranyltransferase subunit alpha).
Genome Resources: Alliance (1),  Gene:767725 (1),  Ensembl(GRCz11):ENSDARG00000061024 (2)
GENE EXPRESSION
All Expression Data: Fig. 4 from Hsu et al., 2013
Wild-type Stages, Structures: Adult (90d-730d, breeding adult) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa6721 Point Mutation Unknown Premature Stop ENU
sa12408 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa24239 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31078 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rabggta HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rabggta VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein geranylgeranylation (more)
    Cellular Component Rab-protein geranylgeranyltransferase complex (more)
    Molecular Function protein prenyltransferase activity (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rabggta-201 (1)    Ensembl 2995
    ncRNA rabggta-002 (1)    Ensembl 881
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rabggta No data available
    MARKER RELATIONSHIPS
    rabggta Contained in: [BAC] CH73-212E20 (1)
    rabggta Encodes: [cDNA] MGC:153107 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001076663 (1) 3015 nt
    Genomic GenBank:CU693481 (1) 87009 nt
    Select Tool
    Polypeptide UniProtKB:F1QJ77 (1) 580 aa
    Sequence Information (all 9)
    ORTHOLOGY for rabggta ( Chr: 23 )
    CITATIONS (16)