ZFIN ID: ZDB-GENE-060929-1042
Gene Name: Rab geranylgeranyltransferase, alpha subunit
Gene Symbol: rabggta
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:153107

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(Including Attributions)
Location: Chr: 23 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: Fig. 4 from Hsu et al., 2013
Wild-type Stages, Structures: Adult (90d-730d, breeding adult) to Adult (90d-730d, breeding adult)
  whole organism
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa6721 Point Mutation Unknown Premature Stop ENU
sa12408 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa24239 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31078 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rabggta HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein geranylgeranylation (more)
    Cellular Component Rab-protein geranylgeranyltransferase complex (more)
    Molecular Function Rab geranylgeranyltransferase activity (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001611 (1)
  • InterPro:IPR002088 (1)
  • InterPro:IPR009087 (1)
  • InterPro:IPR032675 (1)
  • InterPro:IPR032955 (1)
  • PROSITE:PS51147 (1)
  • PROSITE:PS51450 (1)
  • Pfam:PF01239 (1)
  • Pfam:PF07711 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rabggta-001 (1) 2995
    ncRNA rabggta-002 (1) 881
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rabggta No data available
    MARKER RELATIONSHIPS
    rabggtaContained in: [BAC] CH73-212E20 (1) (order this)
    rabggtaEncodes: [cDNA] MGC:153107 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001076663 (1) 3015bp
    Genomic GenBank:CU693481 (1) 87009bp
    Select Tool
    Polypeptide UniProtKB:F1QJ77 (1) 580aa
    Sequence Clusters UniGene:138610 (1)
    Sequence Information (all 10)
    OTHER rabggta GENE PAGES
  • Alliance (1)
  • Gene:767725 (1)
  • VEGA:OTTDARG00000034070 (1)
  • Ensembl(GRCz10):ENSDARG00000061024 (1)
  • ORTHOLOGY for rabggta (Chr: 23)
    CITATIONS (14)