ZFIN ID: ZDB-GENE-060503-675
Gene Name: exosome component 5
Gene Symbol: exosc5
Sequence Ontology ID : SO:0000704

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Attributions

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Previous Names: si:ch211-194n6.2, zgc:153707

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(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in RNA catabolic process, RNA metabolic process, and nuclear-transcribed mRNA catabolic process; predicted to localize to the cytoplasmic exosome (RNase complex), nuclear  ...
GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa45645 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH exosc5 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH exosc5 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process nuclear mRNA surveillance (more)
    Cellular Component cytoplasmic exosome (RNase complex) (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001247 (1)
  • InterPro:IPR015847 (1)
  • InterPro:IPR020568 (1)
  • InterPro:IPR027408 (1)
  • InterPro:IPR036345 (1)
  • Pfam:PF01138 (1)
  • Pfam:PF03725 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA exosc5-201 (1) 705
    exosc5-202 (1) 486
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM exosc5 No data available
    MARKER RELATIONSHIPS
    exosc5Contained in: [BAC] CH211-194N6 (1) (order this)
    exosc5Encodes: [cDNA] MGC:153707 (1) (order this), MGC:191490 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001045352 (1) 734bp
    Genomic GenBank:BX649594 (1) 195263bp
    Select Tool
    Polypeptide UniProtKB:Q1LVM3 (1) 222aa
    Sequence Clusters UniGene:81724 (1)
    Sequence Information (all 20)
    OTHER exosc5 GENE PAGES
  • Alliance (1)
  • Gene:751632 (1)
  • VEGA:OTTDARG00000014987 (1)
  • ORTHOLOGY for exosc5 (Chr: 18)
    CITATIONS (14)