ZFIN Gene: rnpc3

ZFIN ID: ZDB-GENE-060312-35

ZFIN ID: ZDB-GENE-060312-35

Gene Name:

RNA-binding region (RNP1, RRM) containing 3

Gene Symbol:

rnpc3

Sequence Ontology ID :

SO:0000704

Previous Names:

caliban (1), clbn, zgc:136847 (1)

Location:

Chr: 24 Mapping Details/Browsers

Nomenclature History

AUTOMATED DESCRIPTION

Predicted to have U12 snRNA binding activity and pre-mRNA intronic binding activity. Involved in animal organ development; digestive tract development; and mRNA splicing, via spliceosome. Predicted ...

GENE EXPRESSION
All Expression Data:	2 figures from 2 publications
Wild-type Stages, Structures:	Blastula:128-cell (2.25h-2.5h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
	digestive system intestine lens liver pancreas pharyngeal arch proliferative region whole organism
Curated Microarray Expression:	GEO (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
la028632Tg	Transgenic Insertion	Unknown	Unknown	DNA	Zebrafish International Resource Center (ZIRC) (order this)
s846	Point Mutation	Unknown	Cryptic Acceptor Splice Site	ENU
sa37916	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
zm00416857Tg	Transgenic Insertion	Intron 1	Unknown	DNA

PHENOTYPE

Data:	4 figures from Markmiller et al., 2014
Observed in:	eye intestinal bulb intestinal epithelium liver mRNA splicing, via spliceosome pancreas swim bladder yolk

DISEASE ASSOCIATED WITH rnpc3 HUMAN ORTHOLOG

Disease Ontology Term	OMIM Term	OMIM Phenotype ID
	?Growth hormone deficiency, isolated, type V	618160

DISEASE ASSOCIATED WITH rnpc3 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	digestive tract development (more)
Cellular Component	nucleus (more)
Molecular Function	nucleic acid binding (more)

GO Terms (all 13)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR000504 (1) InterPro:IPR012677 (1) InterPro:IPR034147 (1) InterPro:IPR035979 (1)	PROSITE:PS50102 (1)	Pfam:PF00076 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
mRNA	rnpc3-201 (1)	1729	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	rnpc3-202 (1)	897	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Withdrawn Transcripts
mRNA	ottdart00000029043 (1)	1729	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	ottdart00000029044 (1)	535	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	ottdart00000029045 (1)	855	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	ottdart00000044680 (1)	783	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

GENE PRODUCT DESCRIPTION

INTERACTIONS AND PATHWAYS

ANTIBODIESNo data available

PLASMIDSNo data available

CONSTRUCTS WITH SEQUENCES FROM rnpc3 No data available

MARKER RELATIONSHIPS

rnpc3Contained in:	[BAC] CH73-178J6 (1) (order this), CH211-287N14 (1) (order this)
rnpc3Encodes:	[cDNA] MGC:136847 (1) (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_001039930 (1)	1722bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CR388050 (1)	176933bp	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:F1Q8J0 (1)	505aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
Sequence Clusters	UniGene:79649 (1)

Sequence Information (all 21)

OTHER rnpc3 GENE PAGES

Alliance (1)

Gene:565672 (1)

VEGA:OTTDARG00000032025 (1)

Ensembl(GRCz11):ENSDARG00000011247 (2)

ORTHOLOGY for rnpc3 (Chr: 24)

CITATIONS (30)

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