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ZIRC
ZFIN ID: ZDB-GENE-060312-35
Gene Name: RNA-binding region (RNP1, RRM) containing 3
Gene Symbol: rnpc3
Sequence Ontology ID : SO:0000704

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Previous Names: caliban (1), clbn, zgc:136847 (1)

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(Including Attributions)
Location: Chr: 24 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have U12 snRNA binding activity and pre-mRNA intronic binding activity. Involved in animal organ development; digestive tract development; and mRNA splicing, via spliceosome. Predicted  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Blastula:128-cell (2.25h-2.5h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028632Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • s846 Point Mutation Unknown Cryptic Acceptor Splice Site ENU
    sa37916 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zm00416857Tg Transgenic Insertion Intron 1 Unknown DNA
    DISEASE ASSOCIATED WITH rnpc3 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    ?Growth hormone deficiency, isolated, type V 618160
    DISEASE ASSOCIATED WITH rnpc3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process digestive tract development (more)
    Cellular Component nucleus (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 13)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rnpc3-201 (1) 1729
    rnpc3-202 (1) 897
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rnpc3 No data available
    MARKER RELATIONSHIPS
    rnpc3Contained in: [BAC] CH73-178J6 (1) (order this), CH211-287N14 (1) (order this)
    rnpc3Encodes: [cDNA] MGC:136847 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001039930 (1) 1722bp
    Genomic GenBank:CR388050 (1) 176933bp
    Select Tool
    Polypeptide UniProtKB:F1Q8J0 (1) 505aa
    Sequence Clusters UniGene:79649 (1)
    Sequence Information (all 21)
    ORTHOLOGY for rnpc3 (Chr: 24)
    CITATIONS (30)