ZFIN ID: ZDB-GENE-050706-53
Gene Name: DEAD (Asp-Glu-Ala-Asp) box helicase 42
Gene Symbol: ddx42
Sequence Ontology ID : SO:0000704

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Previous Names: im:7148194, si:dkey-15n1.10, zgc:111815

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ATP binding activity and nucleic acid binding activity; orthologous to human DDX42 (DEAD-box helicase 42).
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7148194]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa521 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa10438 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ddx42 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ddx42 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process RNA secondary structure unwinding (more)
    Cellular Component cytoplasm (more)
    Molecular Function ATP binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000629 (1)
  • InterPro:IPR001650 (1)
  • InterPro:IPR011545 (1)
  • InterPro:IPR014001 (1)
  • InterPro:IPR014014 (1)
  • InterPro:IPR027417 (1)
  • PROSITE:PS00039 (1)
  • PROSITE:PS51192 (1)
  • PROSITE:PS51194 (1)
  • PROSITE:PS51195 (1)
  • Pfam:PF00270 (1)
  • Pfam:PF00271 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA ddx42-002 (1) 577
    mRNA ddx42-201 (1) 3693
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ddx42 No data available
    MARKER RELATIONSHIPS
    ddx42Contained in: [BAC] DKEY-15N1 (1) (order this)
    ddx42Encodes: [EST] IMAGE:7148194 (1) (order this)
    [cDNA] MGC:111815 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001037805 (1) 2196bp
    Genomic GenBank:BX324157 (1) 272769bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1QSB8 (1) 908aa
    Sequence Clusters UniGene:81895 (1)
    Sequence Information (all 18)
    OTHER ddx42 GENE PAGES
  • Alliance (1)
  • Gene:503932 (1)
  • VEGA:OTTDARG00000021786 (1)
  • Ensembl(GRCz11):ENSDARG00000037928 (2)
  • ORTHOLOGY for ddx42 (Chr: 3)
    CITATIONS (25)