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ZIRC
ZFIN ID: ZDB-GENE-050522-332
Gene Name: zgc:111976
Gene Symbol: zgc:111976
Sequence Ontology ID : SO:0000704

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Previous Name: TRAP220 (1)

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(Including Attributions)
Location: Chr: 24 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have transcription coregulator activity; predicted to be involved in regulation of transcription by RNA polymerase II; predicted to localize to the mediator complex; orthologous to human  ...

Nomenclature Note: This gene is characterized by full length cDNAs isolated as part of the Zebrafish Gene Collection (ZGC). When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix `zgc:' indicates that this gene is represented by cDNAs generated by the ZGC project.

GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:111976]
  7 figures (7 images) from Thisse et al., 2008 [MGC:111976]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa503 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH zgc:111976 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH zgc:111976 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription by RNA polymerase II (more)
    Cellular Component mediator complex (more)
    Molecular Function transcription coregulator activity (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR019680 (1)
  • Pfam:PF10744 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA zgc:111976-002 (1) 732
    mRNA zgc:111976-201 (1) 1975
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM zgc:111976 No data available
    MARKER RELATIONSHIPS
    zgc:111976Contained in: [BAC] DKEY-192L18 (1) (order this)
    zgc:111976Encodes: [cDNA] MGC:111976 (1) (order this), MGC:192464 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001020636 (1) 1751bp
    Genomic GenBank:BX005461 (1) 162216bp
    Select Tool
    Polypeptide UniProtKB:F1QR19 (1) 571aa
    Sequence Clusters UniGene:85177 (1)
    Sequence Information (all 15)
    ORTHOLOGY for zgc:111976 (Chr: 24)
    CITATIONS (17)