ZFIN ID: ZDB-GENE-050522-302
Gene Name: CCR4-NOT transcription complex, subunit 6-like
Gene Symbol: cnot6l    Nomenclature History

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Previous Name: zgc:111987

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to localize to CCR4-NOT complex; cytoplasm; and nucleus. Orthologous to human CNOT6L (CCR4-NOT transcription complex subunit 6 like).
Genome Resources: Alliance (1),  Gene:553665 (1),  Ensembl(GRCz11):ENSDARG00000054597 (1)
GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la029102Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16674 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH cnot6l HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cnot6l VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process gene silencing by RNA (more)
    Cellular Component CCR4-NOT complex (more)
    Molecular Function exonuclease activity (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA cnot6l-201 (1)    Ensembl 2613
    ncRNA cnot6l-002 (1)    Ensembl 594
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cnot6l No data available
    MARKER RELATIONSHIPS
    cnot6l Contained in: [BAC] DKEY-58F10 (1) (order this)
    cnot6l Encodes: [cDNA] MGC:111987 (1), MGC:191449 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001020638 (1) 2624 nt
    Genomic GenBank:BX640512 (1) 191256 nt
    Select Tool
    Polypeptide UniProtKB:A2BHJ4 (1) 559 aa
    Sequence Information (all 21)
    ORTHOLOGY for cnot6l ( Chr: 5 )
    CITATIONS (23)