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ZIRC
ZFIN ID: ZDB-GENE-050522-236
Gene Name: LIM and senescent cell antigen-like domains 1
Gene Symbol: lims1
Sequence Ontology ID : SO:0001217

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Attributions

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Previous Names: pinch1 (1), wu:fc32c03, zgc:112533

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(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have metal ion binding activity. Involved in heart contraction and regulation of protein kinase B signaling. Localizes to the Z disc and intercalated disc. Is expressed in EVL; hatching  ...
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 6 figures (13 images) from Thisse et al., 2004 [MGC:112533]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa18028 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41878 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH lims1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH lims1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process heart contraction (more)
    Cellular Component intercalated disc (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001781 (1)
  • InterPro:IPR017351 (1)
  • PROSITE:PS00478 (1)
  • PROSITE:PS50023 (1)
  • Pfam:PF00412 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA lims1-201 (1) 3817
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM lims1 No data available
    MARKER RELATIONSHIPS
    lims1 Contained in: [BAC] CH73-17D15 (1) (order this)
    lims1 Encodes: [EST] fc32c03
    [cDNA] MGC:112533 (1) (order this), MGC:191547 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001024389 (1) 2051 bp
    Genomic GenBank:CU694209 (1) 73629 bp
    Select Tool
    Polypeptide UniProtKB:F1QQT3 (1) 336 aa
    Sequence Clusters UniGene:106257 (1)
    Sequence Information (all 22)
    ORTHOLOGY for lims1 ( Chr: 11 )
    CITATIONS (18)