header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-050417-351
Gene Name: spermatogenesis associated 6
Gene Symbol: spata6    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name: zgc:110309 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Predicted to have myosin light chain binding activity. Predicted to be involved in motile cilium assembly and spermatogenesis. Predicted to localize to the sperm connecting piece. Is expressed in neural tube; spinal cord; and ventral mesoderm. Orthologous to human SPATA6 (spermatogenesis associated 6).
Genome Resources: Alliance (1),  Gene:550512 (1),  Ensembl(GRCz11):ENSDARG00000021115 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (4 images) from Thisse et al., 2004 [IMAGE:7147549]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la016265Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14361 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41157 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH spata6 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH spata6 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process spermatogenesis (more)
    Cellular Component sperm connecting piece (more)
    Molecular Function myosin light chain binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR027207 (1)
  • InterPro:IPR032732 (1)
  • InterPro:IPR042769 (1)
  • Pfam:PF14909 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    aberrant processed transcript spata6-202 (1)    Ensembl 747
    mRNA spata6-201 (1)    Ensembl 1865
    spata6-203 (1)    Ensembl 576
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM spata6 No data available
    MARKER RELATIONSHIPS
    spata6 Contained in: [BAC] DKEY-7O6 (1) (order this)
    spata6 Encodes: [EST] IMAGE:7147549 (1) (order this)
    [cDNA] MGC:110309 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001017814 (1) 1867 bp
    Genomic GenBank:BX005425 (1) 252440 bp Blast at MegaBLAST
    Polypeptide UniProtKB:A8WHP7 (1) 455 aa
    Sequence Clusters UniGene:87820 (1)
    Sequence Information (all 17)
    ORTHOLOGY for spata6 ( Chr: 8 )
    CITATIONS (21)