ZFIN ID: ZDB-GENE-050221-2
Gene Name: xin actin binding repeat containing 1
Gene Symbol: xirp1    Nomenclature History

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Previous Names: xin (1), cmya1, Xin alpha 2 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 2 Mapping Details/Browsers
Description: Predicted to have actin binding activity. Involved in glial cell development and retina development in camera-type eye. Predicted to localize to cell junction. Is expressed in several structures, including adaxial cell; cardiovascular system; skeletal muscle; solid lens vesicle; and somite. Orthologous to human XIRP1 (xin actin binding repeat containing 1).
Genome Resources: Alliance (1),  Gene:497637 (1),  Ensembl(GRCz11):ENSDARG00000030722 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa46 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa2039 Point Mutation Unknown Premature Stop ENU
    sa12194 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14052 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16645 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32918 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32919 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32920 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32921 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39826 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39827 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39828 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45100 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45101 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-xirp1
    1
    CRISPR2-xirp1
    2
    CRISPR3-xirp1
    1
    CRISPR4-xirp1
    1
    DISEASE ASSOCIATED WITH xirp1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH xirp1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process glial cell development (more)
    Cellular Component cell junction (more)
    Molecular Function actin binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA xirp1-201 (1)    Ensembl 7297
    xirp1-202 (1)    Ensembl 7503
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Name Type Isotype Host Organism Assay Source Publications
    Ab1-xirp1 polyclonal Rabbit IHC 1
    Ab2-xirp1 polyclonal Rabbit IHC 1
    Ab1-xirp polyclonal Rabbit WB 1
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM xirp1 No data available
    MARKER RELATIONSHIPS
    xirp1 Contained in: [BAC] DKEY-24C2 (1) (order this)
    xirp1 Encodes: [EST] eu717 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001012377 (1) 7100 nt
    Genomic GenBank:BX649335 (1) 220851 nt Blast at MegaBLAST
    Polypeptide UniProtKB:A0A2R8QE60 (1) 2321 aa
    Sequence Information (all 18)
    ORTHOLOGY for xirp1 ( Chr: 2 )
    CITATIONS (34)