ZFIN ID: ZDB-GENE-041010-115
Gene Name: zgc:103482
Gene Symbol: zgc:103482
Sequence Ontology ID : SO:0000704

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Location: Chr: 21 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have mRNA 3'-UTR binding activity; orthologous to human HABP4 (hyaluronan binding protein 4).

Nomenclature Note: This gene is characterized by full length cDNAs isolated as part of the Zebrafish Gene Collection (ZGC). When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix `zgc:' indicates that this gene is represented by cDNAs generated by the ZGC project.

GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (9 images) from Thisse et al., 2004 [MGC:103482]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa15713 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH zgc:103482 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH zgc:103482 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Cellular Component cellular_component (more)
    Molecular Function mRNA 3'-UTR binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006861 (1)
  • InterPro:IPR027205 (1)
  • InterPro:IPR032381 (1)
  • InterPro:IPR039764 (1)
  • Pfam:PF04774 (1)
  • Pfam:PF16174 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA zgc:103482-201 (1) 1446
    zgc:103482-202 (1) 796
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM zgc:103482 No data available
    MARKER RELATIONSHIPS
    zgc:103482Contained in: [BAC] DKEY-30K6 (1) (order this)
    zgc:103482Encodes: [cDNA] MGC:103482 (1) (order this), MGC:191333 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001006022 (1) 1297bp
    Genomic GenBank:AL844141 (1) 257634bp Blast at MegaBLAST
    Polypeptide UniProtKB:B0R085 (1) 347aa
    Sequence Clusters UniGene:82471 (1)
    Sequence Information (all 17)
    OTHER zgc:103482 GENE PAGES
  • Alliance (1)
  • Gene:450001 (1)
  • VEGA:OTTDARG00000022695 (1)
  • Ensembl(GRCz11):ENSDARG00000025174 (1)
  • ORTHOLOGY for zgc:103482 (Chr: 21)
    CITATIONS (13)