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ZIRC
ZFIN ID: ZDB-GENE-040801-53
Gene Name: zgc:100832
Gene Symbol: zgc:100832    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 23 Mapping Details/Browsers
Description: Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; glycoprotein catabolic process; and ubiquitin-dependent ERAD pathway. Predicted to localize to the SCF ubiquitin ligase complex and cytoplasm. Orthologous to human FBXO6 (F-box protein 6).
Genome Resources: Alliance (1),  Gene:445148 (1),  Ensembl(GRCz11):ENSDARG00000012035 (1)

Nomenclature Note: This gene is characterized by full length cDNAs isolated as part of the Zebrafish Gene Collection (ZGC). When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix `zgc:' indicates that this gene is represented by cDNAs generated by the ZGC project.

GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa37655 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH zgc:100832 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH zgc:100832 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process glycoprotein catabolic process (more)
    Cellular Component cytoplasm (more)
    Molecular Function CONTRIBUTES_TO   ubiquitin protein ligase activity (more)
    GO Terms (all 6)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA zgc:100832-201 (1)    Ensembl 722
    zgc:100832-202 (1)    Ensembl 1960
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM zgc:100832 No data available
    MARKER RELATIONSHIPS
    zgc:100832 Contained in: [BAC] RP71-1K13 (1) (order this)
    zgc:100832 Encodes: [cDNA] MGC:100832 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001003542 (1) 1180 bp
    Genomic GenBank:AL732515 (1) 154426 bp
    Select Tool
    Polypeptide UniProtKB:F1Q8M7 (1) 247 aa
    Sequence Clusters UniGene:120378 (1)
    Sequence Information (all 19)
    ORTHOLOGY for zgc:100832 ( Chr: 23 )
    CITATIONS (13)