ZFIN ID: ZDB-GENE-040704-24
Gene Name: small muscle protein X-linked
Gene Symbol: smpx    Nomenclature History

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Previous Name: zgc:91881

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 24 Mapping Details/Browsers
Description: Predicted to localize to the M band; costamere; and muscle tendon junction. Human ortholog(s) of this gene implicated in X-linked nonsyndromic deafness. Orthologous to human SMPX (small muscle protein X-linked).
Genome Resources: Alliance (1),  Gene:431732 (1),  Ensembl(GRCz11):ENSDARG00000045302 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:91881]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ihb325 Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • ihb326 Indel Unknown Unknown CRISPR
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-smpx
    1
    CRISPR2-smpx
    2
    CRISPR3-smpx
    2
    CRISPR4-smpx 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH smpx HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Deafness, X-linked 4 300066
    DISEASE ASSOCIATED WITH smpx VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component costamere (more)
    Molecular Function molecular_function (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Family IPR029268 Small muscular protein Chisel
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA smpx-201 (1)    Ensembl 2436
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM smpx No data available
    MARKER RELATIONSHIPS
    smpx Contained in: [BAC] DKEY-225N3 (1) (order this)
    smpx Encodes: [cDNA] MGC:91881 (1), MGC:191403 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002185 (1) 2285 bp
    Genomic GenBank:BX537285 (1) 150691 bp
    Select Tool
    Polypeptide UniProtKB:Q6GMK5 (1) 83 aa
    Sequence Information (all 19)
    ORTHOLOGY for smpx ( Chr: 24 )
    CITATIONS (19)