ZFIN ID: ZDB-GENE-040625-96
Gene Name: proteasome 20S subunit alpha 5
Gene Symbol: psma5    Nomenclature History

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Previous Name: zgc:86851 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 11 Mapping Details/Browsers
Description: Predicted to have endopeptidase activity. Predicted to be involved in proteasomal ubiquitin-independent protein catabolic process and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to localize to the cytoplasm; nucleus; and proteasome core complex, alpha-subunit complex. Orthologous to human PSMA5 (proteasome 20S subunit alpha 5).
Genome Resources: Alliance (1),  Gene:403011 (1),  Ensembl(GRCz11):ENSDARG00000003526 (1)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6907330]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa10901 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa19010 Point Mutation Unknown Splice Site ENU
    sa21956 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa30952 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH psma5 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH psma5 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process proteasome-mediated ubiquitin-dependent protein catabolic process (more)
    Cellular Component cytoplasm (more)
    Molecular Function endopeptidase activity (more)
    GO Terms (all 15)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000426 Proteasome alpha-subunit, N-terminal domain
    Family IPR001353 Proteasome, subunit alpha/beta
    Family IPR023332 Proteasome alpha-type subunit
    Homologous_superfamily IPR029055 Nucleophile aminohydrolases, N-terminal
    Family IPR033812 Proteasome subunit alpha5
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA psma5-201 (1)    Ensembl 1131
    psma5-202 (1)    Ensembl 861
    psma5-203 (1)    Ensembl 761
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM psma5 No data available
    MARKER RELATIONSHIPS
    psma5 Contained in: [BAC] CH211-213O11 (1)
    psma5 Encodes: [EST] IMAGE:6907330 (1)
    [cDNA] MGC:86851 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_205708 (1) 1104 bp
    Genomic GenBank:BX248230 (1) 217432 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6TGV6 (1) 241 aa
    Sequence Information (all 17)
    ORTHOLOGY for psma5 ( Chr: 11 )
    CITATIONS (30)