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ZIRC
ZFIN ID: ZDB-GENE-040426-808
Gene Name: ER degradation enhancer, mannosidase alpha-like 1
Gene Symbol: edem1
Sequence Ontology ID : SO:0001217

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Previous Name: zgc:55816 (1)

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have calcium ion binding activity and mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. Predicted to localize to the membrane. Is expressed in anterior axial hypoblast; hatching  ...
GENE EXPRESSION
All Expression Data: 11 figures from 6 publications
Directly Submitted Expression Data: 4 figures (4 images) from Thisse et al., 2004 [MGC:55816]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la025585Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa7046 Point Mutation Unknown Premature Stop ENU
    sa7587 Point Mutation Unknown Missense ENU
    sa31536 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45265 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH edem1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH edem1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process metabolic process (more)
    Cellular Component membrane (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001382 (1)
  • InterPro:IPR012341 (1)
  • InterPro:IPR036026 (1)
  • Pfam:PF01532 (1)
  • EC:3.2.1.- (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA edem1-002 (1) 924
    mRNA edem1-201 (1) 3365
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM edem1 No data available
    MARKER RELATIONSHIPS
    edem1 Contained in: [BAC] CH73-361P23 (1) (order this), DKEY-20F24 (1) (order this)
    edem1 Encodes: [cDNA] MGC:55816 (1) (order this), MGC:192795 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201189 (1) 3352 bp
    Genomic GenBank:BX950172 (1) 231139 bp Blast at MegaBLAST
    Polypeptide UniProtKB:E9QJF1 (1) 628 aa
    Sequence Clusters UniGene:11486 (1)
    Sequence Information (all 17)
    ORTHOLOGY for edem1 ( Chr: 6 )
    CITATIONS (40)