ZFIN ID: ZDB-GENE-040426-803
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Gene Name: very low density lipoprotein receptor
Gene Symbol: vldlr
Sequence Ontology ID : SO:0000704

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Previous Names: lr8 (1), zgc:55792

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(Including Attributions)
Location: Chr: 10 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 10 figures from 2 publications
Directly Submitted Expression Data: 6 figures (8 images) from Thisse et al., 2004 [MGC:55792]
Wild-type Stages, Structures: Gastrula:Bud (10.0h-10.33h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
  axis, brain, central nervous system, cerebellum (all 20) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa14068 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
    • sa17714 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
    • sa38785 Point Mutation Unknown Splice Site ENU
    tud25Gt Transgenic Insertion Intron 2 Unknown DNA
  • European Zebrafish Resource Center (EZRC) (order this)
    • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH vldlr HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    cerebellar ataxia, mental retardation and dysequlibrium syndrome Cerebellar hypoplasia and mental retardation with or without quadrupedal locomotion 1 224050
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000033 (1)
  • InterPro:IPR000152 (1)
  • InterPro:IPR000742 (1)
  • InterPro:IPR001881 (1)
  • InterPro:IPR002172 (1)
  • InterPro:IPR011042 (1)
  • InterPro:IPR018097 (1)
  • InterPro:IPR023415 (1)
  • InterPro:IPR032931 (1)
    		•
  • PROSITE:PS00010 (1)
  • PROSITE:PS01187 (1)
  • PROSITE:PS01209 (1)
  • PROSITE:PS50068 (1)
  • PROSITE:PS51120 (1)
    		•
  • Pfam:PF00057 (1)
  • Pfam:PF00058 (1)
  • Pfam:PF07645 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA vldlr-001 (1) 3496
    Select Tool
    ncRNA vldlr-002 (1) 921
    Select Tool
    vldlr-003 (1) 752
    Select Tool
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM vldlr No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    vldlrContained in: [BAC] CH211-241O7 (1) (order this)
    vldlrEncodes: [cDNA] MGC:55792 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200923 (1) 3751bp
    Select Tool
    Genomic GenBank:CR628386 (1) 148044bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IGN2 (1) 877aa
    Select Tool
    Sequence Clusters UniGene:82354 (1)
    Sequence Information (all 17)
    OTHER vldlr GENE PAGES
  • Gene:393897 (1)
  • VEGA:OTTDARG00000019638 (1)
  • Ensembl(GRCz10):ENSDARG00000006257 (1)
    • ORTHOLOGY for vldlr (Chr: 10)
    CITATIONS (20)