ZFIN ID: ZDB-GENE-040426-2937
Gene Name: transmembrane protein 50A
Gene Symbol: tmem50a    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: fj33b04, wu:fj33b04, zgc:55322 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway. Predicted to localize to integral component of membrane. Orthologous to several human genes including TMEM50A (transmembrane protein 50A).
Genome Resources: Alliance (1),  Gene:406850 (1),  Ensembl(GRCz11):ENSDARG00000015757 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55322]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la012421Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la018669Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa35583 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH tmem50a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH tmem50a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process late endosome to vacuole transport via multivesicular body sorting pathway (more)
    Cellular Component integral component of membrane (more)
    Molecular Function molecular_function (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA tmem50a-203 (1)    Ensembl 1687
    tmem50a-204 (1)    Ensembl 582
    ncRNA tmem50a-002 (1)    Ensembl 923
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM tmem50a No data available
    MARKER RELATIONSHIPS
    tmem50a Contained in: [BAC] DKEY-9G4 (1) (order this)
    tmem50a Encodes: [EST] fj33b04
    [cDNA] MGC:55322 (1), MGC:192311 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_213529 (1) 1699 nt
    Genomic GenBank:BX465191 (1) 114405 nt
    Select Tool
    Polypeptide UniProtKB:Q803R8 (1) 164 aa
    Sequence Information (all 17)
    ORTHOLOGY for tmem50a ( Chr: 13 )
    CITATIONS (27)