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ZIRC
ZFIN ID: ZDB-GENE-040426-2937
Gene Name: transmembrane protein 50A
Gene Symbol: tmem50a
Sequence Ontology ID : SO:0000704

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Previous Names: fj33b04, wu:fj33b04, zgc:55322 (1)

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway. Predicted to localize to the integral component of membrane. Orthologous to human TMEM50A  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55322]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la012421Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la018669Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa35583 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH tmem50a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH tmem50a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process late endosome to vacuole transport via multivesicular body sorting pathway (more)
    Cellular Component integral component of membrane (more)
    Molecular Function molecular_function (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007919 (1)
  • Pfam:PF05255 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA tmem50a-002 (1) 923
    mRNA tmem50a-203 (1) 1687
    tmem50a-204 (1) 582
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM tmem50a No data available
    MARKER RELATIONSHIPS
    tmem50aContained in: [BAC] DKEY-9G4 (1) (order this)
    tmem50aEncodes: [EST] fj33b04
    [cDNA] MGC:55322 (1) (order this), MGC:192311 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_213529 (1) 1699bp
    Genomic GenBank:BX465191 (1) 114405bp
    Select Tool
    Polypeptide UniProtKB:Q803R8 (1) 164aa
    Sequence Clusters UniGene:78492 (1)
    Sequence Information (all 18)
    ORTHOLOGY for tmem50a (Chr: 13)
    CITATIONS (25)