ZFIN ID: ZDB-GENE-040426-2795
Gene Name: RP2 activator of ARL3 GTPase
Gene Symbol: rp2
Sequence Ontology ID : SO:0000704

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Previous Names: nme10 (1), wu:fj10e02, wu:fm72d05, zgc:55632

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 18 figures from 9 publications
Directly Submitted Expression Data: 4 figures (9 images) from Rauch et al., 2003 [MGC:55632]
  1 figure (1 image) from Thisse et al., 2004 [MGC:55632]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hzu1 Small Deletion Exon 2 Unknown TALEN
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • hzu2 Small Deletion Unknown Inframe Deletion TALEN
    sa17284 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 15 figures from 6 publications
    Observed in:
    DISEASE ASSOCIATED WITH rp2 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    retinitis pigmentosa 2 Retinitis pigmentosa 2 312600
    DISEASE ASSOCIATED WITH rp2 VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    retinitis pigmentosa 2 rp2hzu2/hzu2 standard conditions Liu et al., 2017
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process pronephros development (more)
    Cellular Component cell projection (more)
    Molecular Function GTPase activator activity (more)
    GO Terms (all 17)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006599 (1)
  • InterPro:IPR012945 (1)
  • InterPro:IPR016098 (1)
  • InterPro:IPR017901 (1)
  • InterPro:IPR034907 (1)
  • InterPro:IPR036223 (1)
  • InterPro:IPR036850 (1)
  • InterPro:IPR039093 (1)
  • PROSITE:PS51329 (1)
  • Pfam:PF00334 (1)
  • Pfam:PF07986 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rp2-001 (1) 2148
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rp2 No data available
    MARKER RELATIONSHIPS
    rp2Contained in: [BAC] DKEY-62E6 (1) (order this)
    rp2Encodes: [EST] fj10e02, fm72d05 (1)
    [cDNA] MGC:55632 (1) (order this), MGC:192020 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_213446 (1) 2020bp
    Genomic GenBank:BX322552 (1) 230846bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1QC45 (1) 376aa
    Sequence Clusters UniGene:161717 (1)
    Sequence Information (all 25)
    OTHER rp2 GENE PAGES
  • Alliance (1)
  • Gene:406755 (1)
  • VEGA:OTTDARG00000019882 (1)
  • Ensembl(GRCz11):ENSDARG00000044339 (2)
  • ORTHOLOGY for rp2 (Chr: 6)
    CITATIONS (32)