ZFIN Gene: vrk1

ZFIN ID: ZDB-GENE-040426-2709

GENE EXPRESSION
Directly Submitted Expression Data:	1 figure (1 image) from Thisse et al., 2004 [MGC:56266]
Wild-type Stages, Structures:	Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
	unspecified
Curated Microarray Expression:	GEO (1)

MUTANTS AND TARGETED KNOCKDOWNS

Alleles:

sa23040

PHENOTYPE

Phenotype of Human Orthologue	OMIM Phenotype ID
Pontocerebellar hypoplasia type 1A	607596

GENE ONTOLOGY

GO Terms (all 20)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR000719 (1) InterPro:IPR008271 (1) InterPro:IPR011009 (1) InterPro:IPR017441 (1)	PROSITE:PS00107 (1) PROSITE:PS00108 (1) PROSITE:PS50011 (1)	Pfam:PF00069 (1)	EC:2.7.11.1 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
pseudogenic transcript	ch73-218c12.3-001 (1)	1275	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
mRNA	vrk1-001 (1)	1542	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
ncRNA	vrk1-002 (1)	448	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega

GENE PRODUCT DESCRIPTION

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM vrk1 No data available

SEGMENT (CLONE AND PROBE) RELATIONSHIPS

vrk1 Contained in:	[BAC] CH73-218C12 (1) (order this), CH211-135E15 (1) (order this) [Fosmid] CH1073-432E22 (1) (order this)
vrk1 Encodes:	[EST] fe16f06 (1) [cDNA] MGC:56266 (1) (order this), MGC:174836 (1) (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_213385 (1)	1562 bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
Genomic	GenBank:CU467823 (1)	135288 bp	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A7MCR4 (1)	425 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast Vega Protein Blast
Sequence Clusters	UniGene:77494 (1)

OTHER vrk1 GENE PAGES

Gene:406694 (1)

VEGA:OTTDARG00000035003 (1)

Ensembl(Zv9):ENSDARG00000018006 (1)

ORTHOLOGY

CITATIONS (18)