ZFIN ID: ZDB-GENE-040426-2649
Gene Name: SEC13 homolog, nuclear pore and COPII coat complex component
Gene Symbol: sec13
Sequence Ontology ID : SO:0000704

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Previous Names: sec13l1 (1), cb271 (1), sb:cb271, wu:fa08f09, zgc:63980 (1)

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(Including Attributions)
Location: Chr: 22 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have identical protein binding activity and structural molecule activity; involved in several processes, including animal organ development, digestive system development, and endoplasmic  ...
GENE EXPRESSION
All Expression Data: 11 figures from 4 publications
Directly Submitted Expression Data: 6 figures (8 images) from Thisse et al., 2001 [cb271]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sq198 Point Mutation Unknown Unknown ENU
Targeting reagents:
PHENOTYPE
Data: 28 figures from 4 publications
Observed in:
DISEASE ASSOCIATED WITH sec13 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH sec13 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process cartilage development (more)
Cellular Component endoplasmic reticulum exit site (more)
Molecular Function structural molecule activity (more)
GO Terms (all 16)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001680 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR017986 (1)
  • InterPro:IPR036322 (1)
  • InterPro:IPR037363 (1)
  • InterPro:IPR037596 (1)
  • PROSITE:PS50082 (1)
  • PROSITE:PS50294 (1)
  • Pfam:PF00400 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sec13-001 (1) 1473
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sec13 No data available
    MARKER RELATIONSHIPS
    sec13Contained in: [BAC] CH211-195G6 (1) (order this), CH211-257F16 (1) (order this), DKEY-72G22 (1) (order this)
    sec13Encodes: [EST] cb271 (1) (order this), fa08f09 (1)
    [cDNA] MGC:63980 (1) (order this), MGC:174049 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_213335 (1) 1454bp
    Genomic GenBank:CR392343 (1) 194465bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8RKG2 (1) 336aa
    Sequence Clusters UniGene:5496 (1)
    Sequence Information (all 21)
    OTHER sec13 GENE PAGES
  • Alliance (1)
  • Gene:798071 (1)
  • VEGA:OTTDARG00000010782 (1)
  • ORTHOLOGY for sec13 (Chr: 22)
    CITATIONS (24)