ZFIN ID: ZDB-GENE-040426-1664
Gene Name: phosphodiesterase 6C, cGMP-specific, cone, alpha prime
Gene Symbol: pde6c
Sequence Ontology ID : SO:0000704

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Attributions

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Previous Names: eclipse (1), pde6 alpha prime (1), zgc:73085

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(Including Attributions)
Location: Chr: 12 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 11 figures from 9 publications
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ihb73 Insertion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • ihb74 Insertion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • ihb75 Insertion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • rw76a Point Mutation Unknown Unknown ENU
    sa22017 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41953 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • w59 Point Mutation Unknown Frameshift ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 27 figures from 9 publications
    Observed in:
    DISEASE ASSOCIATED WITH pde6c HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    cone dystrophy Cone dystrophy 4 613093
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process embryonic retina morphogenesis in camera-type eye (more)
    Molecular Function 3',5'-cyclic-nucleotide phosphodiesterase activity (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002073 (1)
  • InterPro:IPR003018 (1)
  • InterPro:IPR003607 (1)
  • InterPro:IPR023088 (1)
  • InterPro:IPR023174 (1)
  • InterPro:IPR029016 (1)
  • InterPro:IPR036971 (1)
  • PROSITE:PS00126 (1)
  • PROSITE:PS51845 (1)
  • Pfam:PF00233 (1)
  • Pfam:PF01590 (1)
  • EC:3.1.4.- (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pde6c-001 (1) 4527
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pde6c No data available
    MARKER RELATIONSHIPS
    pde6cContained in: [BAC] CH211-149K17 (1) (order this)
    pde6cEncodes: [EST] fm09c08 (1)
    [cDNA] MGC:73085 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200871 (1) 4544bp
    Genomic GenBank:AL929469 (1) 146415bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IUY2 (1) 852aa
    Sequence Clusters UniGene:117127 (1)
    Sequence Information (all 12)
    OTHER pde6c GENE PAGES
  • Alliance (1)
  • Gene:393845 (1)
  • VEGA:OTTDARG00000020493 (1)
  • Ensembl(GRCz11):ENSDARG00000100397 (1)
  • ORTHOLOGY for pde6c (Chr: 12)
    CITATIONS (48)