ZFIN ID: ZDB-GENE-040426-1508
Gene Name: keratin 18b
Gene Symbol: krt18b
Sequence Ontology ID : SO:0000704

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Attributions

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Previous Names: krtt1c6 (1), keratin 18 (1), zgc:66015, zgc:77517

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have structural molecule activity; predicted to localize to the intermediate filament; orthologous to human KRT18 (keratin 18).
GENE EXPRESSION
All Expression Data: 7 figures from 2 publications
Directly Submitted Expression Data: 6 figures (9 images) from Thisse et al., 2004 [MGC:66015]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH krt18b HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
{Cirrhosis, noncryptogenic, susceptibility to} 215600
{Cirrhosis, noncryptogenic, susceptibility to} 215600
{Cirrhosis, noncryptogenic, susceptibility to} 215600
Cirrhosis, cryptogenic 215600
Cirrhosis, cryptogenic 215600
Cirrhosis, cryptogenic 215600
DISEASE ASSOCIATED WITH krt18b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process biological_process (more)
Cellular Component intermediate filament (more)
Molecular Function structural molecule activity (more)
GO Terms (all 3)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001664 (1)
  • InterPro:IPR002957 (1)
  • InterPro:IPR018039 (1)
  • InterPro:IPR039008 (1)
  • PROSITE:PS00226 (1)
  • PROSITE:PS51842 (1)
  • Pfam:PF00038 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA zgc:77517-201 (1) 1827
    zgc:77517-202 (1) 1302
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM krt18b No data available
    MARKER RELATIONSHIPS
    krt18bContained in: [BAC] DKEY-195M11 (1) (order this)
    krt18bEncodes: [cDNA] MGC:66015 (1) (order this), MGC:77517 (1) (order this), MGC:172192 (1) (order this), MGC:174435 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200568 (1) 1742bp
    Genomic GenBank:CR753817 (1) 236737bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6NYL7 (1) 405aa
    Sequence Clusters UniGene:76027 (1)
    Sequence Information (all 23)
    OTHER krt18b GENE PAGES
  • Alliance (1)
  • Gene:393540 (1)
  • VEGA:OTTDARG00000022018 (1)
  • ORTHOLOGY for krt18b (Chr: 6)
    CITATIONS (18)