header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-040426-1378
Gene Name: speckle type BTB/POZ protein
Gene Symbol: spop    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name: zgc:64140

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have ubiquitin protein ligase binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and regulation of proteolysis. Predicted to localize to the Cul3-RING ubiquitin ligase complex; cytoplasm; and nucleus. Orthologous to human SPOP (speckle type BTB/POZ protein).
Genome Resources: Alliance (1),  Gene:100005514 (1),  Ensembl(GRCz11):ENSDARG00000100519 (1)
GENE EXPRESSION
All Expression Data: 3 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:64140]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa9950 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa18300 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40045 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-spop
    2
    MO1-spop N/A 1
    MO2-spop N/A 1
    DISEASE ASSOCIATED WITH spop HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH spop VIA EXPERIMENTAL MODELS No data available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA spop-202 (1)    Ensembl 2448
    ncRNA spop-002 (1) 535
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM spop No data available
    MARKER RELATIONSHIPS
    spop Contained in: [BAC] CH73-348M5 (1) (order this), CH211-152J7 (1) (order this), CH211-213I9 (1) (order this), DKEY-66B12 (1) (order this)
    spop Encodes: [cDNA] MGC:64140 (1) (order this), MGC:174052 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201130 (1) 2254 bp
    Genomic GenBank:BX248239 (1) 200856 bp Blast at MegaBLAST
    Polypeptide UniProtKB:A7YYH8 (1) 374 aa
    Sequence Clusters UniGene:82336 (1)
    Sequence Information (all 21)
    ORTHOLOGY for spop ( Chr: 3 )
    CITATIONS (24)