ZFIN ID: ZDB-GENE-040426-1112
Gene Name: small nuclear ribonucleoprotein polypeptide E
Gene Symbol: snrpe
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:56682

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(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA binding activity; predicted to be involved in spliceosomal snRNP assembly; predicted to localize to the cytoplasmic part, intracellular organelle, and methylosome; orthologous  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56682]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la017894Tg Transgenic Insertion Unknown Unknown DNA
sa45438 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH snrpe HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    hypotrichosis 11 Hypotrichosis 11 615059
    DISEASE ASSOCIATED WITH snrpe VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process spliceosomal snRNP assembly (more)
    Cellular Component cytosol (more)
    Molecular Function RNA binding (more)
    GO Terms (all 20)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001163 (1)
  • InterPro:IPR010920 (1)
  • InterPro:IPR027078 (1)
  • Pfam:PF01423 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA snrpe-201 (1) 561
    snrpe-202 (1) 378
    snrpe-203 (1) 392
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM snrpe No data available
    MARKER RELATIONSHIPS
    snrpeContained in: [BAC] DKEY-37M22 (1) (order this)
    snrpeEncodes: [cDNA] MGC:56682 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201004 (1) 574bp
    Genomic GenBank:BX005282 (1) 153270bp
    Select Tool
    Polypeptide UniProtKB:Q7ZUG0 (1) 92aa
    Sequence Clusters UniGene:117027 (1)
    Sequence Information (all 12)
    OTHER snrpe GENE PAGES
  • Alliance (1)
  • Gene:393979 (1)
  • VEGA:OTTDARG00000022586 (1)
  • Ensembl(GRCz11):ENSDARG00000033175 (2)
  • ORTHOLOGY for snrpe (Chr: 11)
    CITATIONS (28)