ZFIN ID: ZDB-GENE-030616-554
Gene Name: solute carrier family 17 (vesicular glutamate transporter), member 6b
Gene Symbol: slc17a6b
Sequence Ontology ID : SO:0000704

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Previous Names: slc17a6, blu, blumenkohl, si:packt73.2, si:packt90.2, si:xx-packt73.2 (1), VGLUT2.1 (2), vglut2a (2)

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(Including Attributions)
Location: Chr: 7 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 31 figures from 14 publications
Directly Submitted Expression Data: 7 figures (18 images) from Thisse et al., 2005 [eu1082]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Adult (90d-730d, breeding adult)
  brain, brain glutamatergic neuron, CiD, corpus cerebelli eurydendroid cell (all 27) expand
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la016081Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15613 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31579 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • tc257z Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Targeting reagents: CRISPR1-slc17a6b (1), CRISPR2-slc17a6b (2), MO1-slc17a6b (1)
    PHENOTYPE
    Data: 7 figures from 4 publications
    Observed in: chemical synaptic transmission, nervous system, pigmentation, retinal ganglion cell axon (all 8) expand
    DISEASE ASSOCIATED WITH slc17a6b HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chemical synaptic transmission (more)
    Cellular Component cell junction (more)
    Molecular Function symporter activity (more)
    GO Terms (all 16)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR011701 (1)
  • InterPro:IPR020846 (1)
  • InterPro:IPR036259 (1)
  • PROSITE:PS50850 (1)
  • Pfam:PF07690 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA slc17a6b-001 (1) 5680
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Ab1-slc17a6 (1)
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM slc17a6b
    Tg(slc17a6b:DsRed), Tg(slc17a6b:EGFP), TgBAC(slc17a6b:GAL4FF), TgBAC(slc17a6b:LOXP-DsRed-LOXP-GFP), TgBAC(slc17ab:LOXP-mCherry-LOXP-GAL4FF)
    MARKER RELATIONSHIPS
    slc17a6bContained in: [BAC] CH211-150G13 (1) (order this), DKEY-46P12 (1) (order this)
    [PAC] XX-PACKT73, XX-PACKT90
    slc17a6bEncodes: [EST] eu1082 (1)
    [cDNA] MGC:193644 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001128821 (1) 1887bp
    Genomic GenBank:AL929252 (1) 173244bp
    Select Tool
    Polypeptide UniProtKB:E9QJB9 (1) 584aa
    Sequence Clusters UniGene:37029 (1)
    Sequence Information (all 29)
    OTHER slc17a6b GENE PAGES
  • Alliance (1)
  • Gene:100149756 (1)
  • VEGA:OTTDARG00000028578 (1)
  • Ensembl(GRCz10):ENSDARG00000041150 (1)
  • ORTHOLOGY for slc17a6b (Chr: 7)
    CITATIONS (78)