ZFIN ID: ZDB-GENE-030516-3
Gene Name: collagen type XVIII alpha 1 chain a
Gene Symbol: col18a1a
Sequence Ontology ID : SO:0000704

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Previous Names: cb371 (1), col18a1, cb529 (1), fc96d06, sb:cb529 (1), wu:fb47h10, wu:fb77g12, wu:fc50f04, wu:fc96d06, wu:fk02h12

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 24 figures from 7 publications
Directly Submitted Expression Data: 5 figures (20 images) from Thisse et al., 2001 [cb529]
  8 figures (13 images) from Rauch et al., 2003 [fc50f04]
  6 figures (21 images) from Thisse et al., 2001 [cb371]
Wild-type Stages, Structures: Gastrula:Bud (10.0h-10.33h) to Adult (90d-730d, breeding adult)
  adaxial cell, alar plate midbrain region, aortic arch, blood vessel (all 47) expand
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la026994Tg Transgenic Insertion Unknown Unknown DNA
la026995Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la026996Tg Transgenic Insertion Unknown Unknown DNA
    la029609Tg Transgenic Insertion Unknown Unknown DNA
    la029610Tg Transgenic Insertion Unknown Unknown DNA
    sa34722 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • Targeting reagents: MO1-col18a1a (1), MO2-col18a1a (1)
    PHENOTYPE
    Data: Fig. 4 from Banerjee et al., 2013
    Observed in: neural crest cell migration
    DISEASE ASSOCIATED WITH col18a1a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Knobloch syndrome, type 1 267750
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process neural crest cell migration (more)
    Cellular Component collagen trimer (more)
    Molecular Function structural molecule activity (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001791
  • InterPro:IPR008160
  • InterPro:IPR010515
  • InterPro:IPR013320
  • InterPro:IPR016186
  • InterPro:IPR016187
  • InterPro:IPR020067
  • PROSITE:PS50038
  • Pfam:PF01391
  • Pfam:PF01392
  • Pfam:PF06482
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col18a1-001 (1) 6365
    col18a1-002 (1) 5515
    col18a1-003 (1) 5579
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM col18a1a No data available
    MARKER RELATIONSHIPS
    col18a1aContained in: [BAC] DKEY-237E16 (1) (order this), DKEYP-30E7 (1)
    col18a1aEncodes: [EST] cb371 (1) (order this), cb529 (2) (order this), fb47h10 (1), fb77g12 (1), fc50f04 (1) (order this), fc96d06, fk02h12
    [cDNA] MGC:195107 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001349195 (1) 4266bp
    Genomic GenBank:BX927363 (1) 134994bp
    Select Tool
    Polypeptide UniProtKB:B0S8G4 1645aa
    Sequence Clusters UniGene:52833 (1)
    Sequence Information (all 49)
    OTHER col18a1a GENE PAGES
  • Gene:564123 (1)
  • VEGA:OTTDARG00000022631 (1)
  • Ensembl(GRCz10):ENSDARG00000036558 (1)
  • ORTHOLOGY for col18a1a (Chr: 9)
    CITATIONS (30)