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ZIRC
ZFIN ID: ZDB-GENE-030131-988
Gene Name: SEM1 26S proteasome complex subunit
Gene Symbol: sem1
Sequence Ontology ID : SO:0001217

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Attributions

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Previous Names: shfm1 (1), wu:fb55c02, zgc:85901

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in double-strand break repair via homologous recombination. Predicted to localize to the proteasome regulatory particle, lid subcomplex. Human ortholog(s) of this gene  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:85901]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH sem1 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH sem1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA export from nucleus (more)
Cellular Component proteasome regulatory particle, lid subcomplex (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007834 (1)
  • Pfam:PF05160 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sem1-201 (1) 1475
    sem1-202 (1) 644
    sem1-203 (1) 358
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sem1 No data available
    MARKER RELATIONSHIPS
    sem1 Contained in: [Fosmid] CH1073-274G5 (1) (order this)
    sem1 Encodes: [EST] fb55c02
    [cDNA] MGC:56203 (1) (order this), MGC:85901 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_199593 (1) 1201 bp
    Genomic GenBank:CU634012 (1) 32664 bp
    Select Tool
    Polypeptide UniProtKB:F6NMA4 (1) 92 aa
    Sequence Clusters UniGene:32562 (1)
    Sequence Information (all 21)
    ORTHOLOGY for sem1 ( Chr: 19 )
    CITATIONS (18)