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ZIRC
ZFIN ID: ZDB-GENE-030131-9102
Gene Name: collagen, type I, alpha 1a
Gene Symbol: col1a1a
Sequence Ontology ID : SO:0001217

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Previous Names: alpha1(I) (1), cb21 (1), col1a1, chi, chihuahua, med, microwaved, sb:cb21 (1), sb:cb384, wu:fa99c12, wu:fb02c06

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have extracellular matrix structural constituent. Involved in several processes, including fin development; fin regeneration; and regulation of ossification. Localizes to the cytoplasm.  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
dc124 Point Mutation Unknown Missense ENU
dmh13 Point Mutation Unknown Nonsynonymous ENU
dmh14 Point Mutation Unknown Nonsynonymous ENU
sa1748 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa25246 Point Mutation Unknown Splice Site ENU
    tt281 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH col1a1a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Caffey disease Caffey disease 114000
    osteogenesis imperfecta type 1 Osteogenesis imperfecta, type I 166200
    osteogenesis imperfecta type 2 Osteogenesis imperfecta, type II 166210
    osteogenesis imperfecta type 3 Osteogenesis imperfecta, type III 259420
    osteogenesis imperfecta type 4 Osteogenesis imperfecta, type IV 166220
    osteoporosis {Bone mineral density variation QTL, osteoporosis} 166710
    Ehlers-Danlos syndrome, arthrochalasia type, 1 130060
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process fin development (more)
    Cellular Component cytoplasm (more)
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 18)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA col1a1a-002 (1) 697
    mRNA col1a1a-201 (1) 5797
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM col1a1a
    MARKER RELATIONSHIPS
    col1a1a Contained in: [BAC] DKEY-31N5 (1) (order this)
    col1a1a Encodes: [EST] cb21 (2) (order this), cb384 (order this), fa99c12, fb02c06 (1)
    [cDNA] MGC:64229 (1) (order this), MGC:175062 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_199214 (1) 5548 bp
    Genomic GenBank:AL929222 (1) 212599 bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1QJC9 (1) 1447 aa
    Sequence Clusters UniGene:20097 (1)
    Sequence Information (all 35)
    ORTHOLOGY for col1a1a ( Chr: 3 )
    CITATIONS (110)