ZFIN ID: ZDB-GENE-030131-9075
Gene Name: core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1b
Gene Symbol: c1galt1b    Nomenclature History

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Previous Names: c1galt1, fa98f05, wu:fa98f05, zgc:66485 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 6 Mapping Details/Browsers
Description: Predicted to have glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1; angiogenesis; and kidney development. Predicted to localize to integral component of membrane. Is expressed in EVL; notochord; and periderm. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1).
Genome Resources: Alliance (1),  Gene:337131 (1),  Ensembl(GRCz11):ENSDARG00000055561 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (8 images) from Thisse et al., 2004 [MGC:66485]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH c1galt1b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH c1galt1b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process angiogenesis (more)
Cellular Component integral component of membrane (more)
Molecular Function glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA c1galt1b-201 (1)    Ensembl 2016
c1galt1b-202 (1)    Ensembl 791
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM c1galt1b No data available
MARKER RELATIONSHIPS
c1galt1b Contained in: [BAC] DKEY-195M11 (1) (order this), DKEYP-41G7 (1)
c1galt1b Encodes: [EST] fa98f05
[cDNA] MGC:66485 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_200051 (1) 1723 nt
Genomic GenBank:CR753817 (1) 236737 nt Blast at MegaBLAST
Polypeptide UniProtKB:F1QJQ5 (1) 374 aa
Sequence Information (all 14)
ORTHOLOGY for c1galt1b ( Chr: 6 )
CITATIONS (23)