ZFIN ID: ZDB-GENE-030131-8290
Gene Name: SRY (sex determining region Y)-box 4a
Gene Symbol: sox4a
Sequence Ontology ID : SO:0000704

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Previous Names: sox4, wu:fb82f08 (1), wu:fq41g10 (1), zgc:65850, zgc:77392 (1)

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
All Expression Data: 18 figures from 7 publications
Directly Submitted Expression Data: 6 figures (20 images) from Thisse et al., 2004 [MGC:65850]
  4 figures (12 images) from Rauch et al., 2003 [fq41g10]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE No data available
DISEASE ASSOCIATED WITH sox4a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH sox4a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process closure of optic fissure (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR009071 (1)
  • InterPro:IPR017386 (1)
  • InterPro:IPR036910 (1)
  • PROSITE:PS50118 (1)
  • Pfam:PF00505 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ottdart00000054531 (1) 597
    sox4a-001 (1) 3261
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sox4a No data available
    MARKER RELATIONSHIPS
    sox4aContained in: [BAC] DKEY-150K17 (1) (order this)
    sox4aEncodes: [EST] fb82f08, fq41g10 (order this)
    [cDNA] MGC:65850 (1) (order this), MGC:77392 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_213122 (1) 3350bp
    Genomic GenBank:BX957317 (1) 222684bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6P0Z4 (1) 363aa
    Sequence Clusters UniGene:76585 (1)
    Sequence Information (all 23)
    OTHER sox4a GENE PAGES
  • Alliance (1)
  • Gene:336346 (1)
  • VEGA:OTTDARG00000015033 (1)
  • VEGA:OTTDARG00000038076 (1)
  • ORTHOLOGY for sox4a (Chr: 19)
    CITATIONS (33)