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General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-8290
Gene Name: SRY-box transcription factor 4a
Gene Symbol: sox4a
Sequence Ontology ID : SO:0001217

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Previous Names: sox4, wu:fb82f08 (1), wu:fq41g10 (1), zgc:65850, zgc:77392 (1)

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in closure of optic fissure and negative regulation of smoothened signaling pathway. Predicted to  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE No data available
DISEASE ASSOCIATED WITH sox4a HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
Coffin-Siris syndrome 10 618506
DISEASE ASSOCIATED WITH sox4a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process closure of optic fissure (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 8)
TRANSCRIPTS
Type Name Length (bp) Analysis
mRNA sox4a-201 (1) 3261
sox4a-203 (1) 597
GENE PRODUCT DESCRIPTION
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM sox4a No data available
MARKER RELATIONSHIPS
sox4a Contained in: [BAC] DKEY-150K17 (1) (order this)
sox4a Encodes: [EST] fb82f08, fq41g10 (order this)
[cDNA] MGC:65850 (1) (order this), MGC:77392 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_213122 (1) 3350 bp
Genomic GenBank:BX957317 (1) 222684 bp Blast at MegaBLAST
Polypeptide UniProtKB:Q6P0Z4 (1) 363 aa
Sequence Clusters UniGene:76585 (1)
Sequence Information (all 23)
ORTHOLOGY for sox4a ( Chr: 19 )
CITATIONS (37)