Gene

rpl23a

ID

ZDB-GENE-030131-7479

Name

ribosomal protein L23a

Symbol

rpl23a Nomenclature History

Previous Names

wu:fa93f05
wu:fj20e05
zgc:110139

Type

protein_coding_gene

Location

Chr: 21 Mapping Details/Browsers

Description

Predicted to be a structural constituent of ribosome. Involved in pancreas development and regulation of cell cycle. Predicted to localize to cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; and epithelial cell of pancreas. Orthologous to human RPL23A (ribosomal protein L23a).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Provost et al., 2013

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 2 figures from 2 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rpl23a Human Ortholog

No data available

Associated With rpl23a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR001014	Ribosomal protein L23/L25, conserved site
Domain	IPR005633	Ribosomal protein L23/L25, N-terminal
Family	IPR013025	Ribosomal protein L25/L23
Family	IPR019985	Ribosomal protein L23
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR012678	Ribosomal protein L23/L15e core domain superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	Ribosomal protein L23	Ribosomal protein L23/L15e core domain superfamily	Ribosomal protein L23/L25, conserved site	Ribosomal protein L23/L25, N-terminal	Ribosomal protein L25/L23
UniProtKB:Q6Q416 InterPro	155
UniProtKB:F1QGI3 InterPro	155
UniProtKB:F1Q9T9 InterPro	152
UniProtKB:A0A2R8QC66 InterPro	147
UniProtKB:Q4G0B1 InterPro	155

Transcripts

Genome Browsers

Type	Name	Length (nt)	Analysis
mRNA	rpl23a-201 (1) Ensembl	563 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rpl23a-204 (1) Ensembl	709 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rpl23a-002 (1) Ensembl	551 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rpl23a-003 (1) Ensembl	869 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations