ZFIN Gene: ubqln4

ZFIN ID: ZDB-GENE-030131-6269

ZFIN ID: ZDB-GENE-030131-6269

Gene Name:

ubiquilin 4

Gene Symbol:

ubqln4 Nomenclature History

Previous Names:

ubin, ataxin-1 ubiquitin-like interacting protein (1), wu:fb48e11, wu:fb54b10, wu:fi41e06 (1), zgc:113928, zgc:66188

Gene Type:

protein_coding_gene

Location:

Chr: 16 Mapping Details/Browsers

Description:

Predicted to have polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to colocalize with the cytosolic proteasome complex. Orthologous to human UBQLN4 (ubiquilin 4).

Genome Resources:

Alliance (1), Gene:334337 (1), Ensembl(GRCz11):ENSDARG00000052975 (2)

GENE EXPRESSION
Directly Submitted Expression Data:	1 figure (1 image) from Thisse et al., 2004 [MGC:66188]
Wild-type Stages, Structures:	Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
	unspecified
Curated Microarray Expression:	GEO (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
sa9131	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa15580	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa22943	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)

PHENOTYPE No data available

DISEASE ASSOCIATED WITH ubqln4 HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH ubqln4 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	ubiquitin-dependent protein catabolic process (more)
Cellular Component	cytosol (more)
Molecular Function	polyubiquitin modification-dependent protein binding (more)

GO Terms (all 4)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR000626 (1) InterPro:IPR006636 (1) InterPro:IPR009060 (1) InterPro:IPR015496 (1) InterPro:IPR015940 (1) InterPro:IPR029071 (1)	PROSITE:PS50030 (1) PROSITE:PS50053 (1)	Pfam:PF00240 (1) Pfam:PF00627 (1)

TRANSCRIPTS
Type	Name	Length (nt)	Analysis
mRNA	ubqln4-201 (1)	3328	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	ubqln4-202 (1)	2395	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Browsers: UCSC, NCBI, Ensembl, ZFIN

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM ubqln4 No data available

MARKER RELATIONSHIPS

ubqln4 Contained in:	[BAC] DKEY-185P18 (1) (order this)
ubqln4 Encodes:	[EST] fb48e11, fb54b10 (1), fi41e06 [cDNA] MGC:66188 (1) (order this), MGC:113928 (1)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_213356 (1)	3237 bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX323793 (1)	170199 bp	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:F1Q8U2 (1)	599 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
Sequence Clusters	UniGene:20274 (1)

Sequence Information (all 21)

ORTHOLOGY for ubqln4 ( Chr: 16 )

CITATIONS (20)

{{control.fieldName}} Edit

Attributions

Add new Alias

Attributions for Alias: {{control.newAlias}}

Delete Alias: