ZFIN ID: ZDB-GENE-030131-6062
Gene Name: leucine rich repeat containing 40
Gene Symbol: lrrc40
Sequence Ontology ID : SO:0000704

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Previous Names: fi33a12, wu:fi33a12, zgc:63729 (1)

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to localize to the cytoplasm; orthologous to human LRRC40 (leucine rich repeat containing 40).
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:63729]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa10669 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14971 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH lrrc40 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH lrrc40 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process signal transduction (more)
    Cellular Component plasma membrane (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001611 (1)
  • InterPro:IPR003591 (1)
  • InterPro:IPR032675 (1)
  • PROSITE:PS51450 (1)
  • Pfam:PF13855 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA lrrc40-002 (1) 850
    lrrc40-003 (1) 916
    mRNA lrrc40-201 (1) 2217
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM lrrc40 No data available
    MARKER RELATIONSHIPS
    lrrc40Contained in: [BAC] CH211-241M14 (1) (order this)
    lrrc40Encodes: [EST] fi33a12
    [cDNA] MGC:63729 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_199862 (1) 2201bp
    Genomic GenBank:BX255895 (1) 159627bp
    Select Tool
    Polypeptide UniProtKB:F1REP7 (1) 601aa
    Sequence Clusters UniGene:80656 (1)
    Sequence Information (all 15)
    OTHER lrrc40 GENE PAGES
  • Alliance (1)
  • Gene:334130 (1)
  • VEGA:OTTDARG00000019772 (1)
  • Ensembl(GRCz11):ENSDARG00000017708 (2)
  • ORTHOLOGY for lrrc40 (Chr: 6)
    CITATIONS (17)