ZFIN ID: ZDB-GENE-030131-5486
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Gene Name: nanog homeobox
Gene Symbol: nanog
Sequence Ontology ID : SO:0000704

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Previous Names: fd20a07, nanog-like (1), wu:fd19e04, wu:fd20a07 (1), zgc:193933

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(Including Attributions)
Location: Chr: 24 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 13 figures from 9 publications
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
a166 Small Deletion Exon 1 Frameshift, Premature Stop TALEN
ihb97 Small Deletion Unknown Unknown TALEN
ihb98 Insertion Unknown Unknown TALEN
ihb168 Indel Unknown Unknown CRISPR
ihb169 Indel Unknown Unknown CRISPR
la022843Tg Transgenic Insertion Unknown Unknown DNA
m1435 Small Deletion Exon 1 Frameshift, Premature Stop TALEN
sa44104 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Targeting reagents:
    PHENOTYPE
    Data: 15 figures from 5 publications
    Observed in:
    DISEASE ASSOCIATED WITH nanog HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH nanog VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process gastrulation (more)
    Cellular Component nucleus (more)
    Molecular Function protein homodimerization activity (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
    		•
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
    		•
  • Pfam:PF00046 (1)
    		•
    TRANSCRIPTS No data available
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM nanog No data available
    MARKER RELATIONSHIPS
    nanogContains: [SNP] rs3729322 (1), rs3729323 (1)
    nanogEncodes: [EST] fd19e04, fd20a07
    [cDNA] MGC:193930 (1), MGC:193933 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001098392 (1)
    Select Tool
    Genomic GenBank:CABZ01072215 (1) 6926bp
    Select Tool
    Polypeptide UniProtKB:A5JNG8 (1) 384aa
    Select Tool
    Sequence Clusters UniGene:46544 (1)
    Sequence Information (all 24)
    OTHER nanog GENE PAGES
  • Alliance (1)
  • Gene:792333 (1)
  • Ensembl(GRCz11):ENSDARG00000075113 (1)
    • ORTHOLOGY for nanog (Chr: 24)
    CITATIONS (58)