ZFIN ID: ZDB-GENE-030131-3902
Gene Name: RNA binding motif protein 4.1
Gene Symbol: rbm4.1    Nomenclature History

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Previous Names: rbm4, wu:fc31f07, wu:fc57h11

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 7 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Predicted to be involved in mRNA cis splicing, via spliceosome and regulation of alternative mRNA splicing, via spliceosome. Predicted to localize to the nuclear speck. Orthologous to several human genes including RBM4B (RNA binding motif protein 4B).
Genome Resources: Alliance (1),  Gene:573001 (1),  Ensembl(GRCz11):ENSDARG00000036386 (2)
GENE EXPRESSION
All Expression Data: 3 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56302]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 4 (96.0h-120.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa2347 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa9445 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rbm4.1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rbm4.1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA cis splicing, via spliceosome (more)
    Cellular Component nucleus (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000504 RNA recognition motif domain
    Domain IPR001878 Zinc finger, CCHC-type
    Domain IPR034897 RBM4, RNA recognition motif 1
    Domain IPR034898 RBM4, RNA recognition motif 2
    Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    Homologous_superfamily IPR035979 RNA-binding domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rbm4.1-201 (1)    Ensembl 1626
    rbm4.1-203 (1)    Ensembl 753
    ncRNA rbm4.1-002 (1)    Ensembl 580
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rbm4.1 No data available
    MARKER RELATIONSHIPS
    rbm4.1 Contained in: [BAC] CH211-15B10 (1)
    rbm4.1 Encodes: [EST] fc31f07, fc57h11
    [cDNA] MGC:56302 (1), MGC:86885 (1), MGC:174391 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_199705 (1) 1645 nt
    Genomic GenBank:AL928799 (1) 89993 nt
    Select Tool
    Polypeptide UniProtKB:A9JT29 (1) 419 aa
    Sequence Information (all 29)
    ORTHOLOGY for rbm4.1 ( Chr: 7 )
    CITATIONS (25)